ung:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
deleting Pfam from accessions table on evolution pages
touch
 
(2 intermediate revisions by the same user not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|   id="M46abe25aa8bee"  class=" tableEdit Evolution_homologs_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M46abe25aa8bee"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 217: Line 217:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="E46abe27dd6d20"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46abe27dd6d20"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF03167 PF03167  Uracil DNA glycosylase superfamily]
|
|-  
|-  
|
|
Line 234: Line 241:
|
|
   
   
|-
|
[[EcoCyc]]
|
EcoCyc:EG11058
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG11058
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120001047
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB1051
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0008495
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 253: Line 295:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|   id="J46a825dd674c0"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46a825dd674c0"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 08:34, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT3G18630 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000026445 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00034107 (score: 1.000; bootstrap: 100%)
  • WBGene00042492 (score: 0.185)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00013241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000016407 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000014499 (score: 0.650)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000005659 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-900 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1828 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0214910 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000033675 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000007986 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000242576 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000024145 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:109352 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q4JF19 (score: 1.000; bootstrap: 100%)
  • Q7XQA5 (score: 0.611)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000009190 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000000872 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YML021C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC11836 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000155102 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00029513001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000048248 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

UNG

From SHIGELLACYC

E. coli O157

UNG

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF03167 Uracil DNA glycosylase superfamily

Superfamily (EcoliWiki Page)

SUPERFAMILY:52141

Panther (EcoliWiki Page)

PTHR11264:SF0

EcoCyc

EcoCyc:EG11058

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11058

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001047

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1051

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008495

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ung:Evolution&oldid=1390839"