rlmD:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
deleting Pfam from accessions table on evolution pages
touch
 
(3 intermediate revisions by the same user not shown)
Line 10: Line 10:
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|rumB}}{{Tab|Gene|rumB}}{{Tab|Gene Product(s)|rumB}}{{Tab|Expression|rumB}}{{Tab On|Evolution|rumB}}{{Tab|On One Page|rumB}}{{TabsBottom}}
{{Tab|Quickview|rlmD}}{{Tab|Gene|rlmD}}{{Tab|Gene Product(s)|rlmD}}{{Tab|Expression|rlmD}}{{Tab On|Evolution|rlmD}}{{Tab|On One Page|rlmD}}{{TabsBottom}}
{|
{|
|-  
|-  
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|   id="O46abb022b0142"  class=" tableEdit Evolution_homologs_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="O46abb022b0142"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 160: Line 160:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="F46abb03295863"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46abb03295863"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
Line 177: Line 177:
|
|
   
   
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF05958 PF05958  tRNA (Uracil-5-)-methyltransferase]
|
|-
|
[[EcoCyc]]
|
EcoCyc:EG11247
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG11247
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120001223
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB1228
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0009127
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 196: Line 238:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|   id="F46a7fd6db692b"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46a7fd6db692b"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 08:31, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000011586 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000007965 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000020907 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000011236 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0036838 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17699-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000003261 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000008084 (score: 0.245)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000252136 (score: 1.000; bootstrap: 100%)
  • ENSP00000340970 (score: 0.199)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000012937 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000024244 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000041064 (score: 0.170)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000002580 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000163469 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000154813 (score: 0.213)

From Inparanoid:20070104

Shigella flexneri

YBJF

From SHIGELLACYC

E. coli O157

YBJF

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:53335

Panther (EcoliWiki Page)

PTHR11061:SF2

Pfam (EcoliWiki Page)

PF05958 tRNA (Uracil-5-)-methyltransferase

EcoCyc

EcoCyc:EG11247

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11247

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001223

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1228

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009127

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=rlmD:Evolution&oldid=1389473"