lysS:Evolution: Difference between revisions

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deleting Pfam from accessions table on evolution pages
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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01336 PF01336  OB-fold nucleic acid binding domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00152 PF00152  tRNA synthetases class II (D, K and N) ]
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[[EcoCyc]]
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EcoCyc:EG10552
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10552
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000545
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0547
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009486
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000018541 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000015585 (score: 0.625)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000017005 (score: 1.000; bootstrap: 60%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G13490 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000020828 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00042783 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00002238 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000029741 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000019375 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-021115-8 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040718-103 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231263 (score: 1.000; bootstrap: 100%)
  • DDB0231264 (score: 0.057)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0027084 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11433-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000030796 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000325448 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000007599 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000003387 (score: 0.264)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000002697 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000002726 (score: 0.796)

From Inparanoid:20070104

Mus musculus

  • MGI:1934754 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6K1T2 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000014280 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000044454 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR037W (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC17G93c (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000141816 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00017760001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000004655 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

LYSS

From SHIGELLACYC

E. coli O157

LYSS

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01336 OB-fold nucleic acid binding domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:50249

Panther (EcoliWiki Page)

PTHR22594:SF4

Superfamily (EcoliWiki Page)

SUPERFAMILY:55681

Pfam (EcoliWiki Page)

PF00152 tRNA synthetases class II (D, K and N)

EcoCyc

EcoCyc:EG10552

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10552

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000545

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0547

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009486

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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