bcr:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF07690 PFAM:PF07690]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24003:SF28 PTHR24003:SF28]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24003:SF28 PTHR24003:SF28]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=103473 SUPERFAMILY:103473]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=103473 SUPERFAMILY:103473]
[http://pfam.janelia.org/family/PF07690 PF07690  Major Facilitator Superfamily]
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[[EcoCyc]]
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EcoCyc:EG11419
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11419
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001384
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1390
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0007221
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:33, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000019955 (score: 1.000; bootstrap: 100%)
  • YP_025306 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00017861 (score: 1.000; bootstrap: 100%)
  • WBGene00010182 (score: 0.275)
  • WBGene00021814 (score: 0.256)
  • WBGene00010282 (score: 0.240)
  • WBGene00020888 (score: 0.191)
  • WBGene00013996 (score: 0.186)
  • WBGene00012280 (score: 0.181)
  • WBGene00020889 (score: 0.180)
  • WBGene00016095 (score: 0.158)
  • WBGene00016093 (score: 0.154)
  • WBGene00016094 (score: 0.143)
  • WBGene00018706 (score: 0.138)
  • WBGene00012170 (score: 0.137)
  • WBGene00008793 (score: 0.103)
  • WBGene00012222 (score: 0.098)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000009900 (score: 1.000; bootstrap: 100%)
  • YP_025306 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000001580 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000010495 (score: 0.456)
  • YP_025306 (score: 1.000; bootstrap: 54%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000342819 (score: 1.000; bootstrap: 100%)
  • YP_025306 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003060 (score: 1.000; bootstrap: 100%)
  • YP_025306 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YP_025306 (score: 1.000; bootstrap: 100%)
  • YBR008C (score: 1.000; bootstrap: 100%)
  • YPR156C (score: 1.000; bootstrap: 100%)
  • YGR138C (score: 0.882)
  • YLL028W (score: 0.165)
  • YOR273C (score: 0.155)
  • YHR048W (score: 0.151)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • YP_025306 (score: 1.000; bootstrap: 100%)
  • SPBC4098 (score: 1.000; bootstrap: 100%)
  • SPBC361c (score: 1.000; bootstrap: 100%)
  • SPCC15291 (score: 1.000; bootstrap: 100%)
  • SPCC5695c (score: 0.580)
  • SPBC362c (score: 0.573)
  • SPAC11D35 (score: 0.241)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000182614 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000182022 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000172063 (score: 0.199)
  • YP_025306 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00003491001 (score: 1.000; bootstrap: 100%)
  • GSTENP00010764001 (score: 0.425)
  • GSTENP00035906001 (score: 0.298)
  • GSTENP00016459001 (score: 0.295)
  • YP_025306 (score: 0.092)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000038760 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

BCR

From SHIGELLACYC

E. coli O157

BCR

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR24003:SF28

Superfamily (EcoliWiki Page)

SUPERFAMILY:103473

Pfam (EcoliWiki Page)

PF07690 Major Facilitator Superfamily

EcoCyc

EcoCyc:EG11419

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11419

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001384

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1390

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007221

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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