rlmB:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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{|   id="I46ac19bd57980"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="I46ac19bd57980"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00588 PFAM:PF00588]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12029:SF7 PTHR12029:SF7]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12029:SF7 PTHR12029:SF7]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55315 SUPERFAMILY:55315]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55315 SUPERFAMILY:55315]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=75217 SUPERFAMILY:75217]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00588 PF00588  SpoU rRNA Methylase family]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=75217 SUPERFAMILY:75217]
[http://pfam.janelia.org/family/PF08032 PF08032  RNA 2'-O ribose methyltransferase substrate binding]
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[[EcoCyc]]
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EcoCyc:G7845
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12483
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120004341
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2376
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0013684
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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!|Name!!URL!!Comments
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Latest revision as of 08:38, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT2G19870 (score: 1.000; bootstrap: 76%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00012864 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000008350 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0169271 (score: 1.000; bootstrap: 100%)
  • DDB0229824 (score: 0.057)
  • DDB0190236 (score: 0.056)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000250156 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000000835 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000004042 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Mus musculus

  • MGI:2443470 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q5JKV8 (score: 1.000; bootstrap: 63%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000015427 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000034375 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YOR201C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC13473c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000140606 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00019138001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000048602 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

YJFH

From SHIGELLACYC

E. coli O157

YJFH

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR12029:SF7

Superfamily (EcoliWiki Page)

SUPERFAMILY:55315

Superfamily (EcoliWiki Page)

SUPERFAMILY:75217

Pfam (EcoliWiki Page)

PF00588 SpoU rRNA Methylase family

Pfam (EcoliWiki Page)

PF08032 RNA 2'-O ribose methyltransferase substrate binding

EcoCyc

EcoCyc:G7845

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12483

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004341

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2376

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013684

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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