fdx:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00111 PFAM:PF00111]
[http://pfam.janelia.org/family/PF00111 PF00111 2Fe-2S iron-sulfur cluster binding domain]
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[[EcoCyc]]
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EcoCyc:EG11328
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11328
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001299
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1304
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0008311
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:34, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000013242 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000014725 (score: 0.079)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000031287 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G05450 (score: 1.000; bootstrap: 100%)
  • AT4G21090 (score: 0.726)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000013630 (score: 1.000; bootstrap: 83%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00034438 (score: 1.000; bootstrap: 100%)
  • WBGene00042998 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00013532 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000020973 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000026369 (score: 0.103)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014565 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0189319 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0011769 (score: 1.000; bootstrap: 100%)
  • FBgn0035529 (score: 0.059)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18029-PA (score: 1.000; bootstrap: 100%)
  • GA18016-PA (score: 0.606)
  • GA12105-PA (score: 0.073)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000007465 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000027649 (score: 0.585)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000260270 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000002810 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000006864 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018154 (score: 0.058)

From Inparanoid:20070104

Mus musculus

  • MGI:1915415 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q7XIU2 (score: 1.000; bootstrap: 100%)
  • Q69LJ8 (score: 0.566)
  • Q7XIU1 (score: 0.455)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000028127 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000016263 (score: 0.057)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPL252C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC22E120c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000160554 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00019614001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000046485 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000030454 (score: 0.102)
  • ENSXETP00000021528 (score: 0.090)

From Inparanoid:20070104

Shigella flexneri

FDX

From SHIGELLACYC

E. coli O157

FDX

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00111 2Fe-2S iron-sulfur cluster binding domain

Panther (EcoliWiki Page)

PTHR23426:SF8

Superfamily (EcoliWiki Page)

SUPERFAMILY:54292

EcoCyc

EcoCyc:EG11328

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11328

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001299

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1304

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008311

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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