cdd:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00383 PFAM:PF00383]
[http://pfam.janelia.org/family/PF00383 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF08211 PF08211  Cytidine and deoxycytidylate deaminase zinc-binding region ]
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[[EcoCyc]]
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EcoCyc:EG10137
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10137
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000133
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0135
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0007086
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:33, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT2G19570 (score: 1.000; bootstrap: 100%)
  • AT4G29610 (score: 0.361)
  • AT4G29600 (score: 0.306)
  • AT4G29620 (score: 0.225)
  • AT4G29640 (score: 0.199)
  • AT4G29570 (score: 0.149)
  • AT4G29650 (score: 0.114)
  • AT4G29630 (score: 0.088)
  • AT4G29580 (score: 0.074)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000008074 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1911 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2851 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-041114-88 (score: 0.365)
  • ZDB-GENE-041114-88 (score: 0.365)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0032001 (score: 1.000; bootstrap: 100%)
  • FBgn0032002 (score: 0.369)
  • FBgn0032003 (score: 0.280)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000289839 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1919519 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000000499 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC15564c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

CDD

From SHIGELLACYC

E. coli O157

CDD

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region

Panther (EcoliWiki Page)

PTHR11644:SF12

Superfamily (EcoliWiki Page)

SUPERFAMILY:53927

Superfamily (EcoliWiki Page)

SUPERFAMILY:53927

Pfam (EcoliWiki Page)

PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region

EcoCyc

EcoCyc:EG10137

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10137

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000133

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0135

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007086

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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