rpsK:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00411 PFAM:PF00411]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11759:SF3 PTHR11759:SF3]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11759:SF3 PTHR11759:SF3]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53137 SUPERFAMILY:53137]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53137 SUPERFAMILY:53137]
[http://pfam.janelia.org/family/PF00411 PF00411  Ribosomal protein S11]
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[[EcoCyc]]
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EcoCyc:EG10910
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10910
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000901
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0903
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0010807
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000011326 (score: 1.000; bootstrap: 65%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000005466 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G36160 (score: 1.000; bootstrap: 75%)
  • AT3G11510 (score: 1.000; bootstrap: 73%)
  • AT3G52580 (score: 1.000; bootstrap: 73%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000026421 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041853 (score: 1.000; bootstrap: 48%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004483 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000016894 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000010364 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-8631 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1015 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0230056 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0004403 (score: 1.000; bootstrap: 54%)
  • FBgn0004404 (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18718-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000010950 (score: 1.000; bootstrap: 79%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000317376 (score: 1.000; bootstrap: 83%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000017958 (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000011855 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Mus musculus

  • MGI:1915244 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Oryza gramene

  • Q95H53 (score: 1.000; bootstrap: 97%)
  • Q6L369 (score: 0.986)
  • Q6ENT1 (score: 0.986)
  • P09561 (score: 0.986)
  • Q6QY53 (score: 0.980)
  • Q6QXY9 (score: 0.980)
  • P12096 (score: 0.980)
  • Q6ENE1 (score: 0.980)
  • Q672I7 (score: 0.980)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000012679 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000025007 (score: 1.000; bootstrap: 83%)
  • ENSRNOP00000042650 (score: 0.830)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YCR031C (score: 1.000; bootstrap: 100%)
  • YJL191W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC18H103 (score: 1.000; bootstrap: 100%)
  • SPAC3H55c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000176393 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00022380001 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000043400 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPSK

From SHIGELLACYC

E. coli O157

RPSK

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11759:SF3

Superfamily (EcoliWiki Page)

SUPERFAMILY:53137

Pfam (EcoliWiki Page)

PF00411 Ribosomal protein S11

EcoCyc

EcoCyc:EG10910

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10910

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000901

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0903

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010807

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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