cysS:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46aba5a54c3ce"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01406 PFAM:PF01406]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=47323 SUPERFAMILY:47323]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=47323 SUPERFAMILY:47323]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52374 SUPERFAMILY:52374]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10890:SF3 PTHR10890:SF3]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01406 PF01406  tRNA synthetases class I (C) catalytic domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52374 SUPERFAMILY:52374]
[http://pfam.janelia.org/family/PF09190 PF09190  DALR domain]
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[[EcoCyc]]
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EcoCyc:EG10196
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10196
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000191
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0193
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0001810
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:30, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000016493 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000014858 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G31170 (score: 1.000; bootstrap: 100%)
  • AT5G38830 (score: 0.184)
  • AT3G56300 (score: 0.116)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000015242 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00026863 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000800 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000009138 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000017299 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030328-29 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231318 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0027091 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21073-PA (score: 1.000; bootstrap: 57%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000010362 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000278224 (score: 1.000; bootstrap: 100%)
  • ENSP00000257347 (score: 0.050)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016635 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000008756 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Mus musculus

  • MGI:1351477 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000005636 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000028077 (score: 1.000; bootstrap: 76%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNL247W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC29E66c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000153504 (score: 1.000; bootstrap: 51%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00027063001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000017645 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

CYSS

From SHIGELLACYC

E. coli O157

CYSS

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:47323

Superfamily (EcoliWiki Page)

SUPERFAMILY:52374

Panther (EcoliWiki Page)

PTHR10890:SF3

Pfam (EcoliWiki Page)

PF01406 tRNA synthetases class I (C) catalytic domain

Pfam (EcoliWiki Page)

PF09190 DALR domain

EcoCyc

EcoCyc:EG10196

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10196

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000191

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0193

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001810

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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