cysJ:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00258 PFAM:PF00258]
[http://pfam.janelia.org/family/PF00175 PF00175  Oxidoreductase NAD-binding domain ]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00667 PF00667  FAD binding domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00258 PF00258 Flavodoxin]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19384:SF18 PTHR19384:SF18]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=63380 SUPERFAMILY:63380]
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[[EcoCyc]]
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EcoCyc:EG10191
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10191
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000186
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0188
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009063
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000019316 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000032235 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G24520 (score: 1.000; bootstrap: 99%)
  • AT4G30210 (score: 0.556)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000012372 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000024585 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00026388 (score: 1.000; bootstrap: 93%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001262 (score: 1.000; bootstrap: 92%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000019834 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000014869 (score: 0.056)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000005568 (score: 1.000; bootstrap: 50%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050809-121 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050809-23 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1398 (score: 0.152)
  • ZDB-GENE-030131-5767 (score: 0.152)
  • ZDB-CDNA-041122-8 (score: 0.059)
  • ZDB-GENE-040426-1555 (score: 0.059)
  • ZDB-CDNA-040425-2489 (score: 0.059)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0215407 (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0015623 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11069-PA (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000003188 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000265302 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000026433 (score: 1.000; bootstrap: 69%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000002568 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Mus musculus

  • MGI:97744 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Oryza gramene

  • Q7X7K8 (score: 1.000; bootstrap: 99%)
  • Q9FVM7 (score: 0.828)
  • Q8VX49 (score: 0.699)
  • Q653S9 (score: 0.692)
  • Q6Z0U4 (score: 0.603)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000033034 (score: 1.000; bootstrap: 94%)
  • ENSPTRP00000028690 (score: 0.059)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000001961 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YHR042W (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC29A101 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000162470 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00006656001 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000019692 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Shigella flexneri

CYSJ

From SHIGELLACYC

E. coli O157

CYSJ

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00175 Oxidoreductase NAD-binding domain

Pfam (EcoliWiki Page)

PF00667 FAD binding domain

Pfam (EcoliWiki Page)

PF00258 Flavodoxin

Superfamily (EcoliWiki Page)

SUPERFAMILY:52218

Superfamily (EcoliWiki Page)

SUPERFAMILY:52343

Panther (EcoliWiki Page)

PTHR19384:SF18

Superfamily (EcoliWiki Page)

SUPERFAMILY:63380

EcoCyc

EcoCyc:EG10191

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10191

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000186

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0188

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009063

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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