fadJ:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00378 PFAM:PF00378]
[http://pfam.janelia.org/family/PF02737 PF02737  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00725 PF00725  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00725 PF00725  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00378 PF00378 Enoyl-CoA hydratase/isomerase family]
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[[EcoCyc]]
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EcoCyc:G7212
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG14127
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003787
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3879
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0007723
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:34, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010297 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000018050 (score: 1.000; bootstrap: 79%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G29010 (score: 1.000; bootstrap: 100%)
  • AT3G06860 (score: 0.437)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000032860 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00033493 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020347 (score: 1.000; bootstrap: 100%)
  • WBGene00001150 (score: 0.745)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000006377 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012623 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2581 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-040425-3528 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0028479 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18151-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000026633 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000288682 (score: 1.000; bootstrap: 99%)
  • ENSP00000339020 (score: 0.136)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000005853 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000021954 (score: 0.085)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000019733 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:2135593 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Oryza gramene

  • Q6K7T9 (score: 1.000; bootstrap: 100%)
  • Q8W1L6 (score: 0.981)
  • Q94CN1 (score: 0.465)
  • Q6L4L7 (score: 0.387)
  • Q5WMY4 (score: 0.356)
  • Q60E84 (score: 0.124)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000020159 (score: 1.000; bootstrap: 99%)
  • ENSPTRP00000007920 (score: 0.142)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000002410 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000143533 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00035720001 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000049725 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000015010 (score: 0.201)
  • ENSXETP00000009021 (score: 0.113)

From Inparanoid:20070104

Shigella flexneri

S2554

From SHIGELLACYC

E. coli O157

Z3604

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

Pfam (EcoliWiki Page)

PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

Pfam (EcoliWiki Page)

PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

Pfam (EcoliWiki Page)

PF00378 Enoyl-CoA hydratase/isomerase family

Superfamily (EcoliWiki Page)

SUPERFAMILY:48179

Superfamily (EcoliWiki Page)

SUPERFAMILY:48179

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Superfamily (EcoliWiki Page)

SUPERFAMILY:52096

EcoCyc

EcoCyc:G7212

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14127

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003787

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3879

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007723

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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