User:Ball: Difference between revisions
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==Research Interests== | ==Research Interests== | ||
[[Image:ball.jpg |100px]] | [[Image:ball.jpg |100px]] | ||
Dr. Ball (PhD, UCLA, 1992) is a Senior Research Associate in the Biochemistry Department of Stanford University School of Medicine. The director of the [http://smd.stanford.edu/ Stanford Microarray Database], Dr. Ball’s research interests include analysis, integration and modeling of large-scale biological data. Dr. Ball participates in two collaborative projects to provide model organism databases for ''M. tuberculosis'' [http://www.tbdb.org TBDB] and ''E. coli'' [http://www.ecolihub.org EcoliHub]. As a member and former president of the [http://www.mged.org MGED Society], Dr. Ball has been closely involved in establishing data standards and ontologies that can be used to annotate and to exchange gene expression data derived from microarrays. Her research projects include evaluating and addressing researcher needs for meeting minimal data sharing standards. | Dr. Ball (PhD, UCLA, 1992) is a Senior Research Associate in the Biochemistry Department of Stanford University School of Medicine. The director of the [http://smd.stanford.edu/ Stanford Microarray Database], Dr. Ball’s research interests include analysis, integration and modeling of large-scale biological data. Dr. Ball participates in two collaborative projects to provide model organism databases for ''M. tuberculosis'' [http://www.tbdb.org (TBDB)] and ''E. coli'' [http://www.ecolihub.org (EcoliHub)]. As a member and former president of the [http://www.mged.org MGED Society], Dr. Ball has been closely involved in establishing data standards and ontologies that can be used to annotate and to exchange gene expression data derived from microarrays. Her research projects include evaluating and addressing researcher needs for meeting minimal data sharing standards. | ||
==Key Words== | ==Key Words== | ||
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*ontologies | *ontologies | ||
*gene expression | *gene expression | ||
==Relevant Publications== | |||
*[http://www.ncbi.nlm.nih.gov/pubmed/20488753 Galagan JE, Sisk P, Stolte C, Weiner B, Koehrsen M, Wymore F, Reddy TB, Zucker JD, Engels R, Gellesch M, Hubble J, Jin H, Larson L, Mao M, Nitzberg M, White J, Zachariah ZK, Sherlock G, Ball CA, Schoolnik GK. 2010. TB database 2010: Overview and update. Tuberculosis (Edinb). 2010 Jul;90(4):225-235. PMID: 20488753] | |||
*[http://www.ncbi.nlm.nih.gov/pubmed/19174838 Ioannidis JP, Allison DB, Ball CA, Coulibaly I, Cui X, Culhane AC, Falchi M, Furlanello C, Game L, Jurman G, Mangion J, Mehta T, Nitzberg M, Page GP, Petretto E, van Noort V. 2009. Repeatability of published microarray gene expression analyses. Nat Genet. 2009 Feb;41(2):149-55. PMID: 19174838] | |||
*[http://www.ncbi.nlm.nih.gov/pubmed/18835847 Hubble J, Demeter J, Jin H, Mao M, Nitzberg M, Reddy TB, Wymore F, Zachariah ZK, Sherlock G, Ball CA. 2009. Implementation of GenePattern within the Stanford Microarray Database. Nucleic Acids Res. 2009 Jan;37(Database issue):D898-901. PMID: 18953035] | |||
*[http://www.ncbi.nlm.nih.gov/pubmed/18835847 Reddy TB, Riley R, Wymore F, Montgomery P, DeCaprio D, Engels R, Gellesch M, Hubble J, Jen D, Jin H, Koehrsen M, Larson L, Mao M, Nitzberg M, Sisk P, Stolte C, Weiner B, White J, Zachariah ZK, Sherlock G, Galagan JE, Ball CA, Schoolnik GK. 2008. TB database: an integrated platform for tuberculosis research. Nucleic Acids Res. 2009 Jan;37(Database issue):D499-508. PMID: 18835847] | |||
==References== | ==References== | ||
{{RefHelp}} | {{RefHelp}} | ||
<references/> | <references/> | ||
Latest revision as of 23:53, 28 July 2010
Catherine A. Ball
- Department of Biochemistry
- Stanford University School of Medicine
- Stanford, CA 94305-5307
- USA
- e-mail: ball@genome.stanford.edu
Research Interests
Dr. Ball (PhD, UCLA, 1992) is a Senior Research Associate in the Biochemistry Department of Stanford University School of Medicine. The director of the Stanford Microarray Database, Dr. Ball’s research interests include analysis, integration and modeling of large-scale biological data. Dr. Ball participates in two collaborative projects to provide model organism databases for M. tuberculosis (TBDB) and E. coli (EcoliHub). As a member and former president of the MGED Society, Dr. Ball has been closely involved in establishing data standards and ontologies that can be used to annotate and to exchange gene expression data derived from microarrays. Her research projects include evaluating and addressing researcher needs for meeting minimal data sharing standards.
Key Words
- bioinformatics
- functional genomics
- biological databases
- ontologies
- gene expression
Relevant Publications
References
See Help:References for how to manage references in EcoliWiki.