kdsD:Quickview: Difference between revisions

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{{Tab On|Quickview|kdsD}}{{Tab|Gene|kdsD}}{{Tab|Gene Product(s)|kdsD}}{{Tab|Expression|kdsD}}{{Tab|Evolution|kdsD}}{{Tab|On One Page|kdsD}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[kdsD:Gene|''kdsD]]'' (synonyms: ''ECK3186, b3197, JW3164, yrbH'')<ref name='LIB:Riley_2006'/>
''kdsD''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[kdsD:Gene_Product(s)|KdsD product]]<ref name='LIB:Riley_2006'/>: D-arabinose 5-phosphate isomerase<ref name='LIB:Riley_2006'/>, KdsD<ref name='LIB:EcoCyc10.6'/>, B3197<ref name='LIB:EcoCyc10.6'/>, YrbH<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:D-arabinose 5-phosphate isomerase|D-arabinose 5-phosphate isomerase]]<ref name='LIB:EcoCyc11.1'/>
''ECK3186, b3197, JW3164, yrbH''<ref name='LIB:Riley_2006'/>, yrbH''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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arabinose 5-phosphate isomerase monomer<ref name='LIB:EcoCyc10.6'/>D-arabinose 5-phosphate isomerase<ref name='LIB:EcoCyc11.1'/>
arabinose 5-phosphate isomerase<ref name='LIB:EcoCyc10.6'/>; D-arabinose 5-phosphate isomerase<ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:D-arabinose 5-phosphate isomerase|D-arabinose 5-phosphate isomerase]]<ref name='LIB:EcoCyc11.1'/>


D-arabinose 5-phosphate isomerase; LPS biosynthesis<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''D-arabinose 5-phosphate isomerase<ref name='LIB:Riley_2006'/>, KdsD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B3197<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YrbH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3186, JW3164, yrbH, b3197''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:yrbG-kdsD|yrbG-kdsD]]<ref name='LIB:EcoCyc11.1'/>  
transcription unit(s): [[:Category:Txn_unit:yrbG-kdsD|yrbG-kdsD]]<ref name='LIB:EcoCyc11.1'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=kdsD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7662]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004210&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=kdsD&loc=MG1655%3A3339288..3340274,W3110%3A3341121..3342107,DH10B%3A3437033..3438019,REL606%3A3276501..3277487,BW2952%3A3226436..3227422]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3226436&end=3227422&gene=kdsD&aa=mshvelqpgfdfqqagkevlaiereclaeldqyinqnftlacekmfwckgkvvvmgmgksghigrkmaatfastgtpsffvhpgeaahgdlgmvtpqdvviaisnsgesseitalipvlkrlhvplicitgrpessmaraadvhlcvkvakeacplglaptssttatlvmgdalavallkargftaedfalshpggalgrklllrvndimhtgdeiphvkktaslrdallevtrknlgmtvicddnmmiegiftdgdlrrvfdmgvdvrqlsiadvmtpggirvrpgilavealnlmqsrhitsvmvadgdhllgvlhmhdllragvv]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=kdsD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=kdsD]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
KdsD is homologous to GutQ and KpsF. A kdsD qutQ double mutant is a synthetic lethal.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:48, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

kdsD

Gene Synonym(s)

ECK3186, b3197, JW3164, yrbH[1], yrbH

Product Desc.

arabinose 5-phosphate isomerase[2]; D-arabinose 5-phosphate isomerase[3];

Component of D-arabinose 5-phosphate isomerase[3]

D-arabinose 5-phosphate isomerase; LPS biosynthesis[4]

Product Synonyms(s)

D-arabinose 5-phosphate isomerase[1], KdsD[2][1], B3197[2][1], YrbH[2][1] , ECK3186, JW3164, yrbH, b3197

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yrbG-kdsD[3]

Regulation/Activity
Quick Links



        

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Notes

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KdsD is homologous to GutQ and KpsF. A kdsD qutQ double mutant is a synthetic lethal.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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