yggW:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF04055 PFAM:PF04055]
[http://pfam.janelia.org/family/PF04055 PF04055 Radical SAM superfamily]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13932:SF0 PTHR13932:SF0]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=102114 SUPERFAMILY:102114]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF06969 PF06969  HemN C-terminal region]
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[[EcoCyc]]
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EcoCyc:G7531
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12983
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120004092
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2808
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009694
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT5G63290 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000028387 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000025128 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0205185 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000258955 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000022675 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000026136 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:3039628 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000015966 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000135550 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00019744001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000022002 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

YGGW

From SHIGELLACYC

E. coli O157

YGGW

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF04055 Radical SAM superfamily

Panther (EcoliWiki Page)

PTHR13932:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:102114

Pfam (EcoliWiki Page)

PF06969 HemN C-terminal region

EcoCyc

EcoCyc:G7531

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12983

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004092

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2808

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009694

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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