hicB:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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{|  id="I49b02c8dcbb68"  class=" tableEdit New_Quickview_Table"   
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1432, b1438, JW1433'', ydcQ<ref name='LIB:Riley_2006'/>
''ECK1432, b1438, JW1433'', ydcQ<ref name='LIB:Riley_2006'/>, JW1433, ydcQ''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1438<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HicB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1438<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HicB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1432, JW1433, ydcQ, b1438''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=ydcQ&loc=MG1655:1507511..1507948,W3110:1511201..1511638,DH10B:1598106..1598543,REL606:1479597..1480034 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1479597&end=1480034&gene=ydcQ&aa=mretveimrypvtltpapeggymvsfvdipealtqgetvaeameaakdalltafdfyfedneliplpsplnshdhfievplsvaskvlllnaflqseitqqelarrigkpkqeitrlfnlhhatkidavqlaakalgkelslvmv Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydcQ+AND+escherichia+coli Pubmed(ydcQ)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/dev/search?q=ydcQ Textpresso(ydcQ)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ydcQ&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ydcQ&loc=MG1655%3A1507511..1507948,W3110%3A1511201..1511638,DH10B%3A1598106..1598543,REL606%3A1479597..1480034,BW2952%3A1399591..1400007]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1399591&end=1400007&gene=ydcQ&aa=mretveimrypvtltpapeggymvsfvdipealtqgetvaeameaakdalltafdfyfedneliplpsplnshdhfievplsvaskvlllnaflqseitqqelarrigkpkqeitrlfnlhhatkidavqlaakalgkelslvmv]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydcQ+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ydcQ]]&nbsp;&nbsp;


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Latest revision as of 21:43, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

hicB

Gene Synonym(s)

ECK1432, b1438, JW1433, ydcQ[1], JW1433, ydcQ

Product Desc.

hypothetical protein[2]; predicted DNA-binding transcriptional regulator[3]

Antitoxin for the YncN(HicA) mRNA interferase toxin; mutational suppressor of null rpoE lethality[4]

Product Synonyms(s)

predicted DNA-binding transcriptional regulator[1], B1438[2][1], HicB[2][1] , ECK1432, JW1433, ydcQ, b1438

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yncN[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


IS insertions in ydcQ were isolated as suppressors of rpoE lethality; in wt cells, ydcQ mutants downregulate extracytoplasmic stress responses and OM vesicle production is reduced (Button, 2006). A longer 145 aa translation is unlikely due to a poor RBS and a lack of seqeunce conservation.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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