rlmG:Quickview: Difference between revisions

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{{Tab On|Quickview|rlmG}}{{Tab|Gene|rlmG}}{{Tab|Gene Product(s)|rlmG}}{{Tab|Expression|rlmG}}{{Tab|Evolution|rlmG}}{{Tab|On One Page|rlmG}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[rlmG:Gene|''rlmG]]'' (synonyms: ''ygjO, ECK3074, b3084, JW5513, rsmD'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''rlmG''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[rlmG:Gene_Product(s)|YgjO product]]<ref name='LIB:Riley_2006'/>: predicted methyltransferase small domain<ref name='LIB:Riley_2006'/>, B3084<ref name='LIB:EcoCyc10.6'/>, YgjO<ref name='LIB:EcoCyc10.6'/>, RlmG<ref name='LIB:EcoCyc10.6'/>
''ygjO, ECK3074, b3084, JW5513''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, JW5513, rsmD''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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23S rRNA m<sup>2</sup>G1835 methyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
23S rRNA m<sup>2</sup>G1835 methyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
23S rRNA mG1835 methyltransferase, SAM-dependent<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted methyltransferase small domain<ref name='LIB:Riley_2006'/>, B3084<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgjO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RlmG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3074, JW5513, rsmD, ygjO, b3084''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:ygjO|ygjO]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ygjO|ygjO]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rlmG&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7603]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004156&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rlmG&loc=MG1655%3A3233897..3232761,W3110%3A3234531..3233395,REL606%3A3167556..3168692,BW2952%3A3119909..3121045]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3119909&end=3121045&gene=rlmG&aa=mskfyhsggpmshldngfrsltlqrfpatddvnplqaweaadeyllqqlddteirgpvlilndafgalscalaehkpysigdsyiselatrenlrlngidessvkfldstadypqqpgvvlikvpktlalleqqlralrkvvtsdtriiagakardihtstlelfekvlgpttttlawkkarlinctfnepqladapqtvswklegtdwtihnhanvfsrtgldigarffmqhlpenlegeivdlgcgngvigltlldknpqakvvfvdespmavassrlnvetnmpealdrcefminnalsgvepfrfnavlcnppfhqqhaltdnvawemfhharrclkingelyivanrhldyfhklkkifgncttiatnnkfvvlkavklgrrr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rlmG+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rlmG]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
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RlmG methyltransferase mutants have a disadvantage in competitve growth cultures with wild type (Sergiev, 2006). The rsmD gene name usage was based on an erroneous prediction that RlmG was a small subunit modification enzyme (Bujnicki, 2002).<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:42, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rlmG

Gene Synonym(s)

ygjO, ECK3074, b3084, JW5513[1][2], JW5513, rsmD

Product Desc.

23S rRNA m2G1835 methyltransferase[2][3]

23S rRNA mG1835 methyltransferase, SAM-dependent[4]

Product Synonyms(s)

predicted methyltransferase small domain[1], B3084[2][1], YgjO[2][1], RlmG[2][1] , ECK3074, JW5513, rsmD, ygjO, b3084

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ygjO[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


RlmG methyltransferase mutants have a disadvantage in competitve growth cultures with wild type (Sergiev, 2006). The rsmD gene name usage was based on an erroneous prediction that RlmG was a small subunit modification enzyme (Bujnicki, 2002).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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