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{{Tab On|Quickview|yqiJ}}{{Tab|Gene|yqiJ}}{{Tab|Gene Product(s)|yqiJ}}{{Tab|Expression|yqiJ}}{{Tab|Evolution|yqiJ}}{{Tab|On One Page|yqiJ}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yqiJ:Gene|''yqiJ]]'' (synonyms: ''ECK3039, b3050, JW3022'')<ref name='LIB:Riley_2006'/>
''yqiJ''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yqiJ:Gene_Product(s)|YqiJ product]]<ref name='LIB:Riley_2006'/>: predicted inner membrane protein<ref name='LIB:Riley_2006'/>, B3050<ref name='LIB:EcoCyc10.6'/>, YqiJ<ref name='LIB:EcoCyc10.6'/>
''ECK3039, b3050, JW3022''<ref name='LIB:Riley_2006'/>, JW3022''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted inner membrane protein<ref name='LIB:EcoCyc10.6'/>putative oxidoreductase<ref name='LIB:EcoCyc11.1'/>
predicted inner membrane protein<ref name='LIB:EcoCyc10.6'/>; putative oxidoreductase<ref name='LIB:EcoCyc11.1'/>
 


Inner membrane protein, function unknown<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted inner membrane protein<ref name='LIB:Riley_2006'/>, B3050<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YqiJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3039, JW3022, b3050''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:yqiJ|yqiJ]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yqiJ|yqiJ]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yqiJ&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7588]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004144&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yqiJ&loc=MG1655%3A3190230..3190859,W3110%3A3190864..3191493,DH10B%3A3287975..3288604,REL606%3A3125044..3125673,BW2952%3A3077378..3078007]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3077378&end=3078007&gene=yqiJ&aa=milfadyntpylfaisfvlliglleifalicghmlsgaldahldhydsittghisqalhylnigrlpalvvlcllagffgligillqhacimvwqsplsnlfvvpvsllftiiavhytgkivapwiprdhssaiteeeyigsmalitghqatsgnpcegkltdqfgqihylllepeegkiftkgdkvliicrlsatrylaennpwpqil]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yqiJ+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yqiJ]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
yqiK and yqiJ probably form an operon; PHB and NfeD/STOPP family proteins are often operonic. YqiJ was reported to be an NfeD/STOPP family protein by Chiba (2006). YqiJ is a pfam DUF1449 family member. DUF1449 and NfeD may be part of a superfamily as a pfam Motif Scan of YqiK also hits the Nfed motif (E = 0.0029).<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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<references/>
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Latest revision as of 21:39, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yqiJ

Gene Synonym(s)

ECK3039, b3050, JW3022[1], JW3022

Product Desc.

predicted inner membrane protein[2]; putative oxidoreductase[3]

Inner membrane protein, function unknown[4]

Product Synonyms(s)

predicted inner membrane protein[1], B3050[2][1], YqiJ[2][1] , ECK3039, JW3022, b3050

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yqiJ[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


yqiK and yqiJ probably form an operon; PHB and NfeD/STOPP family proteins are often operonic. YqiJ was reported to be an NfeD/STOPP family protein by Chiba (2006). YqiJ is a pfam DUF1449 family member. DUF1449 and NfeD may be part of a superfamily as a pfam Motif Scan of YqiK also hits the Nfed motif (E = 0.0029).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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