yqiH:Quickview: Difference between revisions

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{{Tab On|Quickview|yqiH}}{{Tab|Gene|yqiH}}{{Tab|Gene Product(s)|yqiH}}{{Tab|Expression|yqiH}}{{Tab|Evolution|yqiH}}{{Tab|On One Page|yqiH}}{{TabsBottom}}
{{Tab On|Quickview|yqiH}}{{Tab|Gene|yqiH}}{{Tab|Gene Product(s)|yqiH}}{{Tab|Expression|yqiH}}{{Tab|Evolution|yqiH}}{{Tab|On One Page|yqiH}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yqiH:Gene|''yqiH]]'' (synonyms: ''ECK3036, b3047, JW5508'')<ref name='LIB:Riley_2006'/>
''yqiH''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yqiH:Gene_Product(s)|YqiH product]]<ref name='LIB:Riley_2006'/>: predicted periplasmic pilin chaperone<ref name='LIB:Riley_2006'/>, B3047<ref name='LIB:EcoCyc10.6'/>, YqiH<ref name='LIB:EcoCyc10.6'/>
''ECK3036, b3047, JW5508''<ref name='LIB:Riley_2006'/>, JW5508''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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putative membrane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
putative membrane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
Putative periplasmic pilus chaperone, function unknown<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted periplasmic pilin chaperone<ref name='LIB:Riley_2006'/>, B3047<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YqiH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3036, JW5508, b3047''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:insCD-5|insCD-5]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:insCD-5|insCD-5]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yqiH&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7586]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004142&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yqiH&loc=MG1655%3A3187903..3188652,W3110%3A3188537..3189286,DH10B%3A3285648..3286397,REL606%3A3122717..3123466,BW2952%3A3075051..3075800]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3075051&end=3075800&gene=yqiH&aa=mklmrylntkniiaagvllscmssiawgaiipdrtriimnesdkgealkltnqsknlpylaqtwiedtkgnksrdfivtvppmvrlnpseqiqirmitqekiaqlpkdretlfyfnvreippktdkknvmqvtmqhalklfwrpkaieleddgvmtyekveiirrndgsirfnnkmpyhvtlgyigtngvtmlpqtqslmvtpfsyantqfknvpstfqvgyindfgglsfyeincpvvnnicnisvanrdq]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yqiH+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yqiH]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
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Probable false positive lipoprotein prediction, Cys not conserved. First 25 aa are a predicted type I signal peptide. YqiH has Ig-like domains: pfam PF00345 aligns to N-terminal residues 26-144, and pfam PF02753 aligns to C-terminal residues 160-227.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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<references/>
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Latest revision as of 21:39, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yqiH

Gene Synonym(s)

ECK3036, b3047, JW5508[1], JW5508

Product Desc.

putative membrane protein[2][3]

Putative periplasmic pilus chaperone, function unknown[4]

Product Synonyms(s)

predicted periplasmic pilin chaperone[1], B3047[2][1], YqiH[2][1] , ECK3036, JW5508, b3047

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): insCD-5[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


Probable false positive lipoprotein prediction, Cys not conserved. First 25 aa are a predicted type I signal peptide. YqiH has Ig-like domains: pfam PF00345 aligns to N-terminal residues 26-144, and pfam PF02753 aligns to C-terminal residues 160-227.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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