pgaC:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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{|  id="B49aeef7382f33"  class=" tableEdit New_Quickview_Table"   
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ycdQ, ECK1012, b1022, JW1007, hmsR''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ycdQ, ECK1012, b1022, JW1007, hmsR''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, hmsR''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted glycosyl transferase<ref name='LIB:Riley_2006'/>, B1022<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HmsR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PgaC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted glycosyl transferase<ref name='LIB:Riley_2006'/>, B1022<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HmsR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PgaC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1012, hmsR, JW1007, ycdQ, b1022''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=pgaC&loc=MG1655:1087069..1085744,W3110:1088268..1086943,DH10B:1140997..1139672,REL606:1102806..1104131 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1102806&end=1104131&gene=pgaC&aa=minrivsffilclvlciplcvayfhsgelmmrfvffwpffmsimwivggvyfwvyrerhwpwgenapapqlkdnpsisiiipcfneeknveetihaalaqryenieviavndgstdktraildrmaaqiphlrvihlaqnqgkaialktgaaaakseylvcidgdalldrdaaayivepmlynprvgavtgnprirtrstlvgkiqvgeyssiiglikrtqriygnvftvsgviaafrrsalaevgywsddmitedidiswklqlnqwtifyepralcwilmpetlkglwkqrlrwaqggaevflknmtrlwrkenfrmwplffeyclttiwaftclvgfiiyavqlagvplnielthiaathtagillctlcllqfivslmienryehnltsslfwiiwfpvifwmlslattlvsftrvmlmpkkqrarwvspdrgilrg Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=pgaC+AND+escherichia+coli Pubmed(pgaC)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/dev/search?q=pgaC Textpresso(pgaC)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=pgaC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6529]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003127&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=pgaC&loc=MG1655%3A1087069..1085744,W3110%3A1088268..1086943,DH10B%3A1140997..1139672,REL606%3A1102806..1104131,BW2952%3A988712..990037]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=988712&end=990037&gene=pgaC&aa=minrivsffilclvlciplcvayfhsgelmmrfvffwpffmsimwivggvyfwvyrerhwpwgenapapqlkdnpsisiiipcfneeknveetihaalaqryenieviavndgstdktraildrmaaqiphlrvihlaqnqgkaialktgaaaakseylvcidgdalldrdaaayivepmlynprvgavtgnprirtrstlvgkiqvgeyssiiglikrtqriygnvftvsgviaafrrsalaevgywsddmitedidiswklqlnqwtifyepralcwilmpetlkglwkqrlrwaqggaevflknmtrlwrkenfrmwplffeyclttiwaftclvgfiiyavqlagvplnielthiaathtagillctlcllqfivslmienryehnltsslfwiiwfpvifwmlslattlvsftrvmlmpkkqrarwvspdrgilrg]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=pgaC+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=pgaC]]&nbsp;&nbsp;


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Latest revision as of 21:47, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

pgaC

Gene Synonym(s)

ycdQ, ECK1012, b1022, JW1007, hmsR[1][2], hmsR

Product Desc.

predicted N-glycosyltransferase[2][3]

Required for biofilm adhesin polysaccharide PGA synthesis; putative polysaccharide polymerase/glycosyltransferase[4]

Product Synonyms(s)

predicted glycosyl transferase[1], B1022[2][1], YcdQ[2][1], HmsR[2][1], PgaC[2][1] , ECK1012, hmsR, JW1007, ycdQ, b1022

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): pgaABCD[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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PgaC complements a mutation in the homologous Y. pestis hemin storage gene hmsR. Two predicted transmembrane domains at the N-terminus and three at the C-terminus may anchor PgaC, which has a large central, possibly periplasmic, domain. CsrA regulon. PGA is oly-beta-1,6-N-acetyl-D-glucosamine.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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