yggX:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
imported>WikiEntryBot
Automated import of articles
 
touch
 
(18 intermediate revisions by 3 users not shown)
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}   
<noinclude>{{TabsTop}}   
{{Tab On|Quickview|yggX}}{{Tab|Gene|yggX}}{{Tab|Gene Product(s)|yggX}}{{Tab|Expression|yggX}}{{Tab|Evolution|yggX}}{{Tab|On One Page|yggX}}{{TabsBottom}}
{{Tab On|Quickview|yggX}}{{Tab|Gene|yggX}}{{Tab|Gene Product(s)|yggX}}{{Tab|Expression|yggX}}{{Tab|Evolution|yggX}}{{Tab|On One Page|yggX}}{{TabsBottom}}
Line 8: Line 17:
|}
|}
</noinclude>
</noinclude>
<!--box uid=421aa90e079fa326b6494f812ad13e79..B469f90de510e6-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.7676.G49b030ee2f659-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|{{Prettytable}}
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|   id="G49b030ee2f659"  class=" tableEdit New_Quickview_Table" 
 
|-
|-
!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
|
||
[[yggX:Gene|''yggX]]'' (synonyms: ''ECK2957, b2962, JW2929'')<ref name='LIB:Riley_2006'/>
''yggX''
|-
|-
!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
|
||
[[yggX:Gene_Product(s)|YggX product]]<ref name='LIB:Riley_2006'/>: protein that protects iron-sulfur proteins against oxidative damage<ref name='LIB:Riley_2006'/>, B2962<ref name='LIB:EcoCyc10.6'/>, YggX<ref name='LIB:EcoCyc10.6'/>
''ECK2957, b2962, JW2929''<ref name='LIB:Riley_2006'/>, JW2929''
|-
|-
!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
|
||
protein that protects iron-sulfur proteins against oxidative damage<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
protein that protects iron-sulfur proteins against oxidative damage<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
Confers protection of iron-sulfur proteins against oxidative damage; paraquat resistance<ref name='LIB:EcoGene'/>
|-
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''protein that protects iron-sulfur proteins against oxidative damage<ref name='LIB:Riley_2006'/>, B2962<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YggX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2957, JW2929, b2962''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
|-
!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
|
||


|-
|-
!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
|
||
transcription unit(s): [[:Category:txn_units:mutY-yggX-mltC|mutY-yggX-mltC]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:txn_units:mutY-yggX|mutY-yggX]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:txn_units:yggX-mltC|yggX-mltC]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:txn_units:yggX|yggX]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:txn_units:yggX-mltC-nupG|yggX-mltC-nupG]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:txn_units:mutY-yggX-mltC-nupG|mutY-yggX-mltC-nupG]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:mutY-yggX-mltC|mutY-yggX-mltC]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:mutY-yggX|mutY-yggX]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:yggX-mltC|yggX-mltC]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:yggX|yggX]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:yggX-mltC-nupG|yggX-mltC-nupG]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:mutY-yggX-mltC-nupG|mutY-yggX-mltC-nupG]]<ref name='LIB:EcoCyc10.6'/>  
|-
|-
!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
|
||


|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..B469f90de510e6&page=&pagename={{FULLPAGENAMEE}} edit table]
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yggX&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7532]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004093&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yggX&loc=MG1655%3A3102115..3102390,W3110%3A3102749..3103024,DH10B%3A3197184..3197459,REL606%3A2989754..2990029,BW2952%3A2989263..2989538]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2989263&end=2989538&gene=yggX&aa=msrtifctflqreaegqdfqlypgelgkriyneiskeawaqwqhkqtmlinekklnmmnaehrklleqemvnflfegkevhiegytpedkk]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yggX+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yggX]]&nbsp;&nbsp;
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.7676.G49b030ee2f659&page=7676&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..B469f90de510e6-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.7676.G49b030ee2f659--></protect>
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
==Notes==
===Notes===
{{BacktoTop}}
 
SoxRS regulon.  Cys7 is essential for YggX function in Salmonella; Salmonella YggX is involved in Fe(II) trafficking, but does not bind iron.  otherPDB (S. typhimurium): 1XS8.<ref name='LIB:EcoGene'/>
 




<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
<references/>
<references/>
</noinclude>
</noinclude>

Latest revision as of 21:56, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yggX

Gene Synonym(s)

ECK2957, b2962, JW2929[1], JW2929

Product Desc.

protein that protects iron-sulfur proteins against oxidative damage[2][3]

Confers protection of iron-sulfur proteins against oxidative damage; paraquat resistance[4]

Product Synonyms(s)

protein that protects iron-sulfur proteins against oxidative damage[1], B2962[2][1], YggX[2][1] , ECK2957, JW2929, b2962

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): mutY-yggX-mltC[2], mutY-yggX[2], yggX-mltC[2], yggX[2], yggX-mltC-nupG[2], mutY-yggX-mltC-nupG[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


SoxRS regulon. Cys7 is essential for YggX function in Salmonella; Salmonella YggX is involved in Fe(II) trafficking, but does not bind iron. otherPDB (S. typhimurium): 1XS8.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=yggX:Quickview&oldid=1398690"