csrD:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''yhdA, ECK3240, b3252, JW3221''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''yhdA, ECK3240, b3252, JW3221''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, JW3221''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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conserved inner membrane protein<ref name='LIB:Riley_2006'/>, B3252<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsrD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''conserved inner membrane protein<ref name='LIB:Riley_2006'/>, B3252<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsrD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3240, JW3221, yhdA, b3252''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=csrD&loc=MG1655:3401354..3399414,W3110:3403187..3401247 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3403187&end=3401247&gene=csrD&aa=mrlttkfsafvtlltgltifvtllgcslsfynaiqykfshrvqavataidthlvsndfsvlrpqitelmmsadivrvdllhgdkqvytlarngsyrpvgssdlfrelsvplikhpgmslrlvyqdpmgnyfhslmttapltgaigfiivmlflavrwlqrqlagqelletratrilngergsnvlgtiyewpprtssaldtllreiqnareqhsrldtlirsyaaqdvktglnnrlffdnqlatlledqekvgthgivmmirlpdfnmlsdtwghsqveeqfftltnllstfmmrypgallaryhrsdfaallphrtlkeaesiagqlikavdtlpnnkmldrddmihigicawrsgqdteqvmehaesatrnaglqggnswaiyddslpekgrgnvrwrtlieqmlsrggprlyqkpavtregqvhhrelmcrifdgneevssaeympmvlqfglseeydrlqisrlipllrywpeenlaiqvtveslirprfqrwlrdtlmqceksqrkriiielaeadvgqhisrlqpvirlvnalgvrvavnqagltlvstswikelnvellklhpglvrniekrtenqllvqslveacsgtstqvyatgvrsrsewqtliqrgvtggqgdffassqpldtnvkkysqrysv Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=csrD+AND+escherichia+coli Pubmed(csrD)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/dev/search?q=csrD Textpresso(csrD)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=csrD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10018]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000016&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=csrD&loc=MG1655%3A3401354..3399414,W3110%3A3403187..3401247,BW2952%3A3286562..3288502]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3286562&end=3288502&gene=csrD&aa=mrlttkfsafvtlltgltifvtllgcslsfynaiqykfshrvqavataidthlvsndfsvlrpqitelmmsadivrvdllhgdkqvytlarngsyrpvgssdlfrelsvplikhpgmslrlvyqdpmgnyfhslmttapltgaigfiivmlflavrwlqrqlagqelletratrilngergsnvlgtiyewpprtssaldtllreiqnareqhsrldtlirsyaaqdvktglnnrlffdnqlatlledqekvgthgivmmirlpdfnmlsdtwghsqveeqfftltnllstfmmrypgallaryhrsdfaallphrtlkeaesiagqlikavdtlpnnkmldrddmihigicawrsgqdteqvmehaesatrnaglqggnswaiyddslpekgrgnvrwrtlieqmlsrggprlyqkpavtregqvhhrelmcrifdgneevssaeympmvlqfglseeydrlqisrlipllrywpeenlaiqvtveslirprfqrwlrdtlmqceksqrkriiielaeadvgqhisrlqpvirlvnalgvrvavnqagltlvstswikelnvellklhpglvrniekrtenqllvqslveacsgtstqvyatgvrsrsewqtliqrgvtggqgdffassqpldtnvkkysqrysv]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=csrD+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=csrD]]&nbsp;&nbsp;


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Latest revision as of 21:52, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

csrD

Gene Synonym(s)

yhdA, ECK3240, b3252, JW3221[1][2], JW3221

Product Desc.

regulator of CsrB and CsrC decay[2][3]

Targets csrB/C sRNAs for degradation by RNase E; carbon flux regulator; mechanism unknown; indirectly affects CsrA function[4]

Product Synonyms(s)

conserved inner membrane protein[1], B3252[2][1], YhdA[2][1], CsrD[2][1] , ECK3240, JW3221, yhdA, b3252

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yhdA[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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CsrD has a central GGDEF putative diguanylate cyclase, then a C-terminal putative cyclic-di-GMP phosphodiesterase EAL domain. CsrD's role in csrB/C destabilization does not involve cyclic-di-GMP metabolism; very low level of CsrD expression; CsrD may work at substoichiometric concentrations (Suzuki, 2006). False positive lipoprotein prediction, Cys not conserved.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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