csgD:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1026, b1040, JW1023''<ref name='LIB:Riley_2006'/>
''ECK1026, b1040, JW1023''<ref name='LIB:Riley_2006'/>, agfD, JW1023''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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DNA-binding transcriptional activator in two-component regulatory system<ref name='LIB:Riley_2006'/>, B1040<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsgD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PP 2-component transcriptional regulator for 2nd curli operon<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''DNA-binding transcriptional activator in two-component regulatory system<ref name='LIB:Riley_2006'/>, B1040<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsgD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PP 2-component transcriptional regulator for 2nd curli operon<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , agfD, ECK1026, JW1023, b1040''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=csgD&loc=MG1655:1102419..1101769,W3110:1103437..1102787,DH10B:1157864..1157214,REL606:1117765..1117115 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1117765&end=1117115&gene=csgD&aa=mfnevhsihghtlllitksslqatallqhlkqslaitgklhniqrslddissgsiilldmmeadkklihywqdtlsrknnnikilllntpedypyrdienwphingvfysmedqervvnglqgvlrgecyftqklasylithsgnyrynstesallthrekeilnklrigasnneiarslfisentvkthlynlfkkiavknrtqavswandnlrr Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=csgD+AND+escherichia+coli Pubmed(csgD)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/dev/search?q=csgD Textpresso(csgD)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=csgD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6546]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003142&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=csgD&loc=MG1655%3A1102419..1101769,W3110%3A1103437..1102787,DH10B%3A1157864..1157214,REL606%3A1117765..1117115,BW2952%3A1005694..1006344]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1005694&end=1006344&gene=csgD&aa=mfnevhsihghtlllitksslqatallqhlkqslaitgklhniqrslddissgsiilldmmeadkklihywqdtlsrknnnikilllntpedypyrdienwphingvfysmedqervvnglqgvlrgecyftqklasylithsgnyrynstesallthrekeilnklrigasnneiarslfisentvkthlynlfkkiavknrtqavswandnlrr]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=csgD+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=csgD]]&nbsp;&nbsp;


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Latest revision as of 21:52, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

csgD

Gene Synonym(s)

ECK1026, b1040, JW1023[1], agfD, JW1023

Product Desc.

CsgD transcriptional activator[2]; CsgD transcriptional dual regulator[3]

Transcriptional activator for csgBA and other genes[4]

Product Synonyms(s)

DNA-binding transcriptional activator in two-component regulatory system[1], B1040[2][1], CsgD[2][1], PP 2-component transcriptional regulator for 2nd curli operon[2][1] , agfD, ECK1026, JW1023, b1040

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): csgDEFG[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


CsgD (AgfD) has also been characterized in Salmonella. CsgD increases expression of glyA. csgD insertions eliminate RpoS-dependent transcription from the csgBA promoter. Cytoplasmic membrane-associated.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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