ycdT:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
touch QV table
touch
 
(5 intermediate revisions by the same user not shown)
Line 23: Line 23:
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  
*  
****************************************************************************************** -->{{Quickview_table_help}}
****************************************************************************************** -->
{| id="F49b02b6cb52f9"  class=" tableEdit New_Quickview_Table"   
{|   id="F49b02b6cb52f9"  class=" tableEdit New_Quickview_Table"   


|-
|-
Line 33: Line 33:
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
''ECK1015, b1025, JW5143''<ref name='LIB:Riley_2006'/>
''ECK1015, b1025, JW5143''<ref name='LIB:Riley_2006'/>, JW5143''
|-
|-
!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
Line 43: Line 43:
!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
||
predicted diguanylate cyclase<ref name='LIB:Riley_2006'/>, B1025<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted diguanylate cyclase<ref name='LIB:Riley_2006'/>, B1025<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1015, JW5143, b1025''
|-
|-
!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
Line 63: Line 63:
!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
||
||
[http://ecoliwiki.net/tools/display_dna.php?gene=ycdT&loc=MG1655:1092099..1093457,W3110:1093298..1094656,DH10B:1146027..1148721,REL606:1109161..1110519 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1109161&end=1110519&gene=ycdT&aa=mekdylrisstvlvsllfglalvlvnswfnqpgveevvprstylmvmialffidtvafifmqlyfiydrrqfsncvlslaflscliyfvitviiiqqiieerltssvvqndiaiyylfrqmslciliflalvnkvsentkqrnlfskkmtlcislffvfggpivahilsshyesynlhiaeltnengqvvwkasyvtimifmwltllsvnlyfnglrydiwngvtviafcavlynisllfmsrysvstwyisrtievvskltvmvifmchifsalrvtkniahrdpltnifnrnyffneltvqsasaqktpycvmimdidhfkkvndtwghpvgdqviktvvniigksirpddllarvggeefgvlltdidterakalaerirenverltgdnpeyaipqkvtisigavvtqenalnpneiyrladnalyeaketgrnkvvvrdvvnfcesp Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ycdT+AND+escherichia+coli Pubmed(ycdT)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/dev/search?q=ycdT Textpresso(ycdT)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ycdT&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6532]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003130&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ycdT&loc=MG1655%3A1092099..1093457,W3110%3A1093298..1094656,DH10B%3A1146027..1148721,REL606%3A1109161..1110519,BW2952%3A995843..997201]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=995843&end=997201&gene=ycdT&aa=mekdylrisstvlvsllfglalvlvnswfnqpgveevvprstylmvmialffidtvafifmqlyfiydrrqfsncvlslaflscliyfvitviiiqqiieerltssvvqndiaiyylfrqmslciliflalvnkvsentkqrnlfskkmtlcislffvfggpivahilsshyesynlhiaeltnengqvvwkasyvtimifmwltllsvnlyfnglrydiwngvtviafcavlynisllfmsrysvstwyisrtievvskltvmvifmchifsalrvtkniahrdpltnifnrnyffneltvqsasaqktpycvmimdidhfkkvndtwghpvgdqviktvvniigksirpddllarvggeefgvlltdidterakalaerirenverltgdnpeyaipqkvtisigavvtqenalnpneiyrladnalyeaketgrnkvvvrdvvnfcesp]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ycdT+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ycdT]]&nbsp;&nbsp;


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Latest revision as of 21:43, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ycdT

Gene Synonym(s)

ECK1015, b1025, JW5143[1], JW5143

Product Desc.

predicted diguanylate cyclase[2][3]

Probable diguanylate cyclase, function unknown[4]

Product Synonyms(s)

predicted diguanylate cyclase[1], B1025[2][1], YcdT[2][1] , ECK1015, JW5143, b1025

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ycdT[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


YcdT is homolgous to Y. pestis hemin storage gene hmsT, but is unable to complement hmsT mutations. Shown not to be a regulator of the divergent pgaABCD operon. Codon usage indicates ycdT is an alien (horizontal) gene. YcdT has a C-terminal putative diguanylate cyclase GGDEF domain.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ycdT:Quickview&oldid=1395363"