csrD:Quickview: Difference between revisions
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!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''yhdA, ECK3240, b3252, JW3221''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''yhdA, ECK3240, b3252, JW3221''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, JW3221'' | ||
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!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
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!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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conserved inner membrane protein<ref name='LIB:Riley_2006'/>, B3252<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsrD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''conserved inner membrane protein<ref name='LIB:Riley_2006'/>, B3252<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsrD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3240, JW3221, yhdA, b3252'' | ||
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!align=left {{table_heading_style}} |Function from GO | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
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[http://ecoliwiki.net/tools/display_dna.php?gene=csrD&loc=MG1655 | [[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=csrD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10018]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000016&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=csrD&loc=MG1655%3A3401354..3399414,W3110%3A3403187..3401247,BW2952%3A3286562..3288502]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3286562&end=3288502&gene=csrD&aa=mrlttkfsafvtlltgltifvtllgcslsfynaiqykfshrvqavataidthlvsndfsvlrpqitelmmsadivrvdllhgdkqvytlarngsyrpvgssdlfrelsvplikhpgmslrlvyqdpmgnyfhslmttapltgaigfiivmlflavrwlqrqlagqelletratrilngergsnvlgtiyewpprtssaldtllreiqnareqhsrldtlirsyaaqdvktglnnrlffdnqlatlledqekvgthgivmmirlpdfnmlsdtwghsqveeqfftltnllstfmmrypgallaryhrsdfaallphrtlkeaesiagqlikavdtlpnnkmldrddmihigicawrsgqdteqvmehaesatrnaglqggnswaiyddslpekgrgnvrwrtlieqmlsrggprlyqkpavtregqvhhrelmcrifdgneevssaeympmvlqfglseeydrlqisrlipllrywpeenlaiqvtveslirprfqrwlrdtlmqceksqrkriiielaeadvgqhisrlqpvirlvnalgvrvavnqagltlvstswikelnvellklhpglvrniekrtenqllvqslveacsgtstqvyatgvrsrsewqtliqrgvtggqgdffassqpldtnvkkysqrysv]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=csrD+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=csrD]] | ||
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Latest revision as of 21:52, 27 May 2013
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
csrD |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
regulator of CsrB and CsrC decay[2][3] Targets csrB/C sRNAs for degradation by RNase E; carbon flux regulator; mechanism unknown; indirectly affects CsrA function[4] |
| Product Synonyms(s) |
conserved inner membrane protein[1], B3252[2][1], YhdA[2][1], CsrD[2][1] , ECK3240, JW3221, yhdA, b3252 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
CsrD has a central GGDEF putative diguanylate cyclase, then a C-terminal putative cyclic-di-GMP phosphodiesterase EAL domain. CsrD's role in csrB/C destabilization does not involve cyclic-di-GMP metabolism; very low level of CsrD expression; CsrD may work at substoichiometric concentrations (Suzuki, 2006). False positive lipoprotein prediction, Cys not conserved.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.