rhmD:Quickview: Difference between revisions

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{|   id="O49b02ef6a2c8d"  class=" tableEdit New_Quickview_Table"   


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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''rhmD''  
''rhmD''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2240, b2247, JW2241''<ref name='LIB:Riley_2006'/>, yfaW product
''ECK2240, b2247, JW2241'', yfaW<ref name='LIB:Riley_2006'/>, JW2241, yfaW''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted enolase<ref name='LIB:Riley_2006'/>, B2247<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfaW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted enolase<ref name='LIB:Riley_2006'/>, B2247<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RhmD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2240, JW2241, yfaW, b2247''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=rhmD&loc=MG1655:2359448..2358231,W3110:2366096..2364879,DH10B:2450436..2449219,REL606:2307939..2306722 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2307939&end=2306722&gene=rhmD&aa=menimtlpkikqvrawftggataekgagggdyhdqganhwiddhiatpmskyrdyeqsrqsfginvlgtlvveveaengqtgfavstagemgcfivekhlnrfiegkcvsdiklihdqmlsatlyysgsgglvmntiscvdlalwdlfgkvvglpvykllggavrdeiqfyatgarpdlakemgfiggkmpthwgphdgdagirkdaamvadmrekcgedfwlmldcwmsqdvnyatklahacapynlkwieeclppqqyesyrelkrnapvgmmvtsgehhgtlqsfrtlsetgidimqpdvgwcgglttlveiaaiaksrgqlvvphgssvyshhavitftntpfseflmtspdcstmrpqfdpillnepvpvngrihksvldkpgfgvelnrdcnlkrpysh Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rhmD+AND+escherichia+coli Pubmed(rhmD)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rhmD Textpresso(rhmD)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yfaW&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7160]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003736&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yfaW&loc=MG1655%3A2359448..2358231,W3110%3A2366096..2364879,DH10B%3A2450436..2449219,REL606%3A2307939..2306722,BW2952%3A2244036..2245253]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2244036&end=2245253&gene=yfaW&aa=menimtlpkikqvrawftggataekgagggdyhdqganhwiddhiatpmskyrdyeqsrqsfginvlgtlvveveaengqtgfavstagemgcfivekhlnrfiegkcvsdiklihdqmlsatlyysgsgglvmntiscvdlalwdlfgkvvglpvykllggavrdeiqfyatgarpdlakemgfiggkmpthwgphdgdagirkdaamvadmrekcgedfwlmldcwmsqdvnyatklahacapynlkwieeclppqqyesyrelkrnapvgmmvtsgehhgtlqsfrtlsetgidimqpdvgwcgglttlveiaaiaksrgqlvvphgssvyshhavitftntpfseflmtspdcstmrpqfdpillnepvpvngrihksvldkpgfgvelnrdcnlkrpysh]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yfaW+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yfaW]]&nbsp;&nbsp;


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Latest revision as of 21:42, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rhmD

Gene Synonym(s)

ECK2240, b2247, JW2241, yfaW[1], JW2241, yfaW

Product Desc.

predicted enolase[2][3]

Putative dehydratase, function unknown[4]

Product Synonyms(s)

predicted enolase[1], B2247[2][1], RhmD[2][1] , ECK2240, JW2241, yfaW, b2247

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rhmD[2]

Regulation/Activity
Quick Links



        

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Notes

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YfaW functions as a L-rhamnonate dehydratate (B.K. Hubbard, J.A. Gerlt, unpublished observations, as cited in Gerlt. 2005). Uses L-lyxonate as substrate.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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