nrdH:Quickview: Difference between revisions

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{{Tab On|Quickview|nrdH}}{{Tab|Gene|nrdH}}{{Tab|Gene Product(s)|nrdH}}{{Tab|Expression|nrdH}}{{Tab|Evolution|nrdH}}{{Tab|On One Page|nrdH}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[nrdH:Gene|''nrdH]]'' (synonyms: ''ECK2667, b2673, JW2648, ygaN'')<ref name='LIB:Riley_2006'/>
''nrdH''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[nrdH:Gene_Product(s)|NrdH product]]<ref name='LIB:Riley_2006'/>: glutaredoxin-like protein<ref name='LIB:Riley_2006'/>, B2673<ref name='LIB:EcoCyc10.6'/>, YgaN<ref name='LIB:EcoCyc10.6'/>, NrdH<ref name='LIB:EcoCyc10.6'/>
''ECK2667, b2673, JW2648, ygaN''<ref name='LIB:Riley_2006'/>, ygaN''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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glutaredoxin-like protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
glutaredoxin-like protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
Hydrogen donor for NrdEF electron transport system; glutaredoxin-like protein; Fur regulon<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''glutaredoxin-like protein<ref name='LIB:Riley_2006'/>, B2673<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgaN<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NrdH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2667, JW2648, ygaN, b2673''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:nrdHIEF|nrdHIEF]]<ref name='LIB:EcoCyc10.6'/>, nrdEF  
transcription unit(s): [[:Category:Txn_unit:nrdHIEF|nrdHIEF]]<ref name='LIB:EcoCyc10.6'/>, nrdEF  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=nrdH&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7401]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003968&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=nrdH&loc=MG1655%3A2798745..2798990,W3110%3A2799379..2799624,REL606%3A2695475..2695720,DH10B%3A2890510..2890755,BW2952%3A2684557..2684802]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2684557&end=2684802&gene=nrdH&aa=mritiytrndcvqchatkramenrgfdfeminvdrvpeaaealraqgfrqlpvviagdlswsgfrpdminrlhpaphaasa]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nrdH+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=nrdH]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
Purified NrdH protein was N-terminally sequenced to show the initial Met is not clipped. This is not counted as verification of the ATG since the purified protein was made with a foreign RBS. theless, this is the correct start. Upregulated by GSNO in defined medium (anaerobic).<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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<references/>
<references/>
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Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

nrdH

Gene Synonym(s)

ECK2667, b2673, JW2648, ygaN[1], ygaN

Product Desc.

glutaredoxin-like protein[2][3]

Hydrogen donor for NrdEF electron transport system; glutaredoxin-like protein; Fur regulon[4]

Product Synonyms(s)

glutaredoxin-like protein[1], B2673[2][1], YgaN[2][1], NrdH[2][1] , ECK2667, JW2648, ygaN, b2673

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nrdHIEF[2], nrdEF

Regulation/Activity
Quick Links



        

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Notes

[back to top]


Purified NrdH protein was N-terminally sequenced to show the initial Met is not clipped. This is not counted as verification of the ATG since the purified protein was made with a foreign RBS. theless, this is the correct start. Upregulated by GSNO in defined medium (anaerobic).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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