PMID:19082552: Difference between revisions

Latest revision as of 04:34, 15 September 2013

Citation	Kropinski, AM, Borodovsky, M, Carver, TJ, Cerdeño-Tárraga, AM, Darling, A, Lomsadze, A, Mahadevan, P, Stothard, P, Seto, D, Van Domselaar, G and Wishart, DS (2009) In silico identification of genes in bacteriophage DNA. Methods Mol. Biol. 502:57-89
Abstract	One of the most satisfying aspects of a genome sequencing project is the identification of the genes contained within it.These are of two types: those which encode tRNAs and those which produce proteins. After a general introduction on the properties of protein-encoding genes and the utility of the Basic Local Alignment Search Tool (BLASTX) to identify genes through homologs, a variety of tools are discussed by their creators. These include for genome annotation: GeneMark, Artemis, and BASys; and, for genome comparisons: Artemis Comparison Tool (ACT), Mauve, CoreGenes, and GeneOrder.
Links	PubMed Online version:10.1007/978-1-60327-565-1_6
Keywords	Bacteriophages/genetics; Computational Biology/methods; DNA, Viral/analysis; DNA, Viral/genetics; Software
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-<span style = 'font-size: large'> '''Kropinski, AM, Borodovsky, M, Carver, TJ, Cerdeño-Tárraga, AM, Darling, A, Lomsadze, A, Mahadevan, P, Stothard, P, Seto, D, Van Domselaar, G and Wishart, DS'''  (2009) In silico identification of genes in bacteriophage DNA.''Methods Mol. Biol.'' '''502''':57-89</span>
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-|{{TableHeadingColor}} |'''Abstract''' || <protect>One of the most satisfying aspects of a genome sequencing project is the identification of the genes contained within it.These are of two types: those which encode tRNAs and those which produce proteins. After a general introduction on the properties of protein-encoding genes and the utility of the Basic Local Alignment Search Tool (BLASTX) to identify genes through homologs, a variety of tools are discussed by their creators. These include for genome annotation: GeneMark, Artemis, and BASys; and, for genome comparisons: Artemis Comparison Tool (ACT), Mauve, CoreGenes, and GeneOrder.</protect>
+!align=left  |Citation
+||
+'''Kropinski, AM, Borodovsky, M, Carver, TJ, Cerdeño-Tárraga, AM, Darling, A, Lomsadze, A, Mahadevan, P, Stothard, P, Seto, D, Van Domselaar, G and Wishart, DS'''  (2009) In silico identification of genes in bacteriophage DNA. ''Methods Mol. Biol.'' '''502''':57-89
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-|{{TableHeadingColor}} nowrap |'''Links''' ||  [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19082552 PubMed]<br/>Online version:[http://dx.doi.org/10.1007/978-1-60327-565-1_6 10.1007/978-1-60327-565-1_6]
+!align=left  |Abstract
+||
+One of the most satisfying aspects of a genome sequencing project is the identification of the genes contained within it.These are of two types: those which encode tRNAs and those which produce proteins. After a general introduction on the properties of protein-encoding genes and the utility of the Basic Local Alignment Search Tool (BLASTX) to identify genes through homologs, a variety of tools are discussed by their creators. These include for genome annotation: GeneMark, Artemis, and BASys; and, for genome comparisons: Artemis Comparison Tool (ACT), Mauve, CoreGenes, and GeneOrder.
+|-
+!align=left  |Links
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+[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19082552 PubMed]
+Online version:[http://dx.doi.org/10.1007/978-1-60327-565-1_6 10.1007/978-1-60327-565-1_6]
+|-
+!align=left  |Keywords
+||
+Bacteriophages/genetics; Computational Biology/methods; DNA, Viral/analysis; DNA, Viral/genetics; Software
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-!|Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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