ydiN:Quickview: Difference between revisions

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Quickview

Standard Name	ydiN
Gene Synonym(s)	ECK1689, b1691, JW5274^[1], JW5274
Product Desc.	YdiN MFS transporter^[2]; putative amino acid/amine MFS transporter^[3] Putative transporter, function unknown; membrane protein; upregulated in shikimate-producer during carbon starvation^[4]
Product Synonyms(s)	predicted transporter^[1], B1691^[2]^[1], YdiN^[2]^[1] , ECK1689, JW5274, b1691
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): ydiN^[2]
Regulation/Activity
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Notes

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Major Facilitator Superfamily (MFS). YdiN is upregulated in shikimate-producer during carbon starvation (Johansson, 2006). ydiN is in an operon with shikimate genes ydiB and aroD. YdiN may be involved in the transport of shikimate or byproducts (quinic acid and 3-dehydroshikimic acid) of its overproduction: a second transport system for shikimate has not yet been mapped (Brown, 1976; Knop, 2001).^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

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@@ Line 23: / Line 23: @@
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->{{Quickview_table_help}}
+****************************************************************************************** -->
-{|  id="V49b02d5a5341e"  class=" tableEdit New_Quickview_Table"
+{|   id="V49b02d5a5341e"  class=" tableEdit New_Quickview_Table"
 |-
 !align=left {{table_heading_style}} |Standard Name
 ||
 ''ydiN''
 |-
 !align=left {{table_heading_style}} |Gene Synonym(s)
 ||
-''ECK1689, b1691, JW5274''<ref name='LIB:Riley_2006'/>
+''ECK1689, b1691, JW5274''<ref name='LIB:Riley_2006'/>, JW5274''
 |-
 !align=left {{table_heading_style}} |Product Desc.
@@ Line 43: / Line 43: @@
 !align=left {{table_heading_style}} |Product Synonyms(s)
 ||
-predicted transporter<ref name='LIB:Riley_2006'/>, B1691<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdiN<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''predicted transporter<ref name='LIB:Riley_2006'/>, B1691<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdiN<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1689, JW5274, b1691''
 |-
 !align=left {{table_heading_style}} |Function from GO
@@ Line 63: / Line 63: @@
 !align=left {{table_heading_style}} |Quick Links
 ||
-[http://ecoliwiki.net/tools/display_dna.php?gene=ydiN&loc=MG1655:1770536..1771801,W3110:1774226..1775491,DH10B:1861107..1862372,REL606:1749778..1751043 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1749778&end=1751043&gene=ydiN&aa=mkmsqnkafstpfilavlciyfsyflhgisvitlaqnmsslaekfstdnagiaylisgiglgrlisilffgvisdkfgrravilmavimyllfffgipacpnltlayglavcvgiansaldtggypalmecfpkasgsavilvkamvsfgqmfypmlvsymllnniwygygliipgilfvlitlmllkskfpsqlvdasvtnelpqmnskplvwlegvssvlfgvaafstfyvivvwmpkyamafagmseaealktisyysmgslvcvfifaallkkmvrpiwanvfnsalatitaaiiylypsplvcnagafvigfsaaggilqlgvsvmseffpkskakvtsiymmmgglanfviplitgylsniglqyiivldftfallalitaiivfiryyrvfiipendvrfgerkfctrlntikhrg Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydiN+AND+escherichia+coli Pubmed(ydiN)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ydiN Textpresso(ydiN)]
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ydiN&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6917]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003505&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ydiN&loc=MG1655%3A1770536..1771801,W3110%3A1774226..1775491,DH10B%3A1861107..1862372,REL606%3A1749778..1751043,BW2952%3A1662589..1663860]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1662589&end=1663860&gene=ydiN&aa=mkmsqnkafstpfilavlciyfsyflhgisvitlaqnmsslaekfstdnagiaylisgiglgrlisilffgvisdkfgrravilmavimyllfffgipacpnltlayglavcvgiansaldtggypalmecfpkasgsavilvkamvsfgqmfypmlvsymllnniwygygliipgilfvlitlmllkskfpsqlvdasvtnelpqmnskplvwlegvssvlfgvaafstfyvivvwmpkyamafagmseaealktisyysmgslvcvfifaallkkmvrpiwanvfnsalatitaaiiylypsplvcnagafvigfsaaggilqlgvsvmseffpkskakvtsiymmmgglanfviplitgylsniglqyiivldftfallalitaiivfiryyrvfiipendvrfgerkfctrlntikhrg]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydiN+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ydiN]]&nbsp;&nbsp;
 |- class="tableEdit_footer"

ydiN:Quickview: Difference between revisions

Latest revision as of 21:42, 27 May 2013

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