yhbJ:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''yhbJ''  
''yhbJ''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3194, b3205, JW3172''<ref name='LIB:Riley_2006'/>
''ECK3194, b3205, JW3172''<ref name='LIB:Riley_2006'/>, JW3172''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted protein with nucleoside triphosphate hydrolase domain<ref name='LIB:Riley_2006'/>, B3205<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhbJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted protein with nucleoside triphosphate hydrolase domain<ref name='LIB:Riley_2006'/>, B3205<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhbJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3194, JW3172, b3205''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=yhbJ&loc=MG1655:3345137..3345991,W3110:3346970..3347824,DH10B:3442882..3443736,REL606:3282350..3283204 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3282350&end=3283204&gene=yhbJ&aa=mvlmivsgrsgsgksvalraledmgfycvdnlpvvllpdlartladreisaavsidvrnmpespeifeqamsnlpdafspqllfldadrntlirrysdtrrlhplssknlslesaidkesdlleplrsradlivdtsemsvhelaemlrtrllgkrereltmvfesfgfkhgipidadyvfdvrflpnphwdpklrpmtgldkpvaafldrhtevhnfiyqtrsylelwlpmletnnrsyltvaigctggkhrsvyiaeqladyfrsrgknvqsrhrtlekrkp Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yhbJ+AND+escherichia+coli Pubmed(yhbJ)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=yhbJ Textpresso(yhbJ)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yhbJ&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12146]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002046&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yhbJ&loc=MG1655%3A3345137..3345991,W3110%3A3346970..3347824,DH10B%3A3442882..3443736,REL606%3A3282350..3283204,BW2952%3A3232285..3233139]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3232285&end=3233139&gene=yhbJ&aa=mvlmivsgrsgsgksvalraledmgfycvdnlpvvllpdlartladreisaavsidvrnmpespeifeqamsnlpdafspqllfldadrntlirrysdtrrlhplssknlslesaidkesdlleplrsradlivdtsemsvhelaemlrtrllgkrereltmvfesfgfkhgipidadyvfdvrflpnphwdpklrpmtgldkpvaafldrhtevhnfiyqtrsylelwlpmletnnrsyltvaigctggkhrsvyiaeqladyfrsrgknvqsrhrtlekrkp]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yhbJ+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yhbJ]]&nbsp;&nbsp;


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Latest revision as of 21:41, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yhbJ

Gene Synonym(s)

ECK3194, b3205, JW3172[1], JW3172

Product Desc.

predicted P-loop containing ATPase[2][3]

Senses glucosamine-6-phosphate and inactivates glmZ sRNA; NTPase[4]

Product Synonyms(s)

predicted protein with nucleoside triphosphate hydrolase domain[1], B3205[2][1], YhbJ[2][1] , ECK3194, JW3172, b3205

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): lptB-rpoN-yhbH-ptsN-yhbJ[2], yhbG-rpoN-yhbH-ptsN-yhbJ, rpoN-yhbH-ptsN-yhbJ-npr[2], rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO

Regulation/Activity
Quick Links



        

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Notes

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Unprocessed glmZ upregulates glmS mRNA, so yhbJ mediates the negative feedback regulation of glmS, through glmZ, by the GlmS product glucosamine-6-phosphate. AFMB Structural Genomics target No. 26 (http://afmb.cnrs-mrs.fr/article171.html). The rpoN operon contains rpoN-hpf-ptsN-yhbJ-npr. UPF0042 family. YhbJ binds ATP and GTP and is an NTPase (Luciano, 2009).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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