cadC:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''cadC''  
''cadC''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4127, b4133, JW4094''<ref name='LIB:Riley_2006'/>
''ECK4127, b4133, JW4094''<ref name='LIB:Riley_2006'/>, JW4094''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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DNA-binding transcriptional activator product<ref name='LIB:Riley_2006'/>, B4133 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CadC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, transcriptional activator of cad operon product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''DNA-binding transcriptional activator<ref name='LIB:Riley_2006'/>, B4133<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CadC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, transcriptional activator of cad operon<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4127, JW4094, b4133''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
<GO_nr />
* GO:0006350 transcription ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Molecular Function'''
* GO:0016563 transcription activator activity ([http://www.geneontology.org/GO.evidence.shtml IMP])
 
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=cadC&loc=MG1655:4359957..4358419,W3110:4366612..4365074,REL606:4340655..4339117,DH10B:4460319..4458781 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4460319&end=4458781&gene=cadC&aa=mqqpvvrvgewlvtpsinqisrngrqltleprlidllvffaqhsgevlsrdelidnvwkrsivtnhvvtqsiselrkslkdndedspvyiatvpkrgyklmvpviwyseeegeeimlsspppipeavpatdspshslniqntatppeqspvkskrfttfwvwfffllslgicvalvafssldtrlpmsksrillnprdidinmvnkscnswsspyqlsyaigvgdlvatslntfstfmvhdkinynidepsssgktlsiafvnqrqyraqqcfmsiklvdnadgstmldkryvitngnqlaiqndlleslskalnqpwpqrmqetlqkilphrgalltnfyqahdyllhgddkslnrasellgeivqsspeftyaraekalvdivrhsqhpldekqlaalnteidnivtlpelnnlsiiyqikavsalvkgktdesyqaintgidlemswlnyvllgkvyemkgmnreaadayltafnlrpgantlywiengifqtsvpyvvpyldkflase Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cadC+AND+escherichia+coli Pubmed(cadC)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=cadC Textpresso(cadC)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=cadC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10133]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000129&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=cadC&loc=MG1655%3A4359957..4358419,W3110%3A4366612..4365074,REL606%3A4340655..4339117,DH10B%3A4460319..4458781,BW2952%3A4297154..4298692]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4297154&end=4298692&gene=cadC&aa=mqqpvvrvgewlvtpsinqisrngrqltleprlidllvffaqhsgevlsrdelidnvwkrsivtnhvvtqsiselrkslkdndedspvyiatvpkrgyklmvpviwyseeegeeimlsspppipeavpatdspshslniqntatppeqspvkskrfttfwvwfffllslgicvalvafssldtrlpmsksrillnprdidinmvnkscnswsspyqlsyaigvgdlvatslntfstfmvhdkinynidepsssgktlsiafvnqrqyraqqcfmsiklvdnadgstmldkryvitngnqlaiqndlleslskalnqpwpqrmqetlqkilphrgalltnfyqahdyllhgddkslnrasellgeivqsspeftyaraekalvdivrhsqhpldekqlaalnteidnivtlpelnnlsiiyqikavsalvkgktdesyqaintgidlemswlnyvllgkvyemkgmnreaadayltafnlrpgantlywiengifqtsvpyvvpyldkflase]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cadC+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=cadC]]&nbsp;&nbsp;


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Latest revision as of 21:52, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

cadC

Gene Synonym(s)

ECK4127, b4133, JW4094[1], JW4094

Product Desc.

CadC transcriptional activator[2][3]

Transcriptional activator for cadBA, low external pH-, low oxygen-, excess lysine-responsive; homodimeric[4]

Product Synonyms(s)

DNA-binding transcriptional activator[1], B4133[2][1], CadC[2][1], transcriptional activator of cad operon[2][1] , ECK4127, JW4094, b4133

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): cadC[2], OP00158

Regulation/Activity
Quick Links



        

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Notes

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cadC transcription is repressed by multicopy leuO. CadC is a membrane spanning protein with a TM helix predicted from 155 to 180. The C-terminal periplasmic domain senses external stimuli and the N-terminal domain activates transcription.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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