dbpA:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''dbpA''  
''dbpA''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1340, b1343, JW1337, rhlC''<ref name='LIB:Riley_2006'/>
''ECK1340, b1343, JW1337, rhlC''<ref name='LIB:Riley_2006'/>, rhlC''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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ATP-dependent RNA helicase, specific for 23S rRNA<ref name='LIB:Riley_2006'/>, B1343<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RhlC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DbpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''ATP-dependent RNA helicase, specific for 23S rRNA<ref name='LIB:Riley_2006'/>, B1343<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RhlC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DbpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1340, JW1337, rhlC, b1343''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
<GO_nr />
* GO:0005524 ATP binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0019843 rRNA binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0034459 ATP-dependent 3'-5' RNA helicase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0043531 ADP binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0003724 RNA helicase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016887 ATPase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0033677 DNA/RNA helicase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
 
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=dbpA&loc=MG1655:1407535..1408908,W3110:1411225..1412598,DH10B:1496931..1498304,REL606:1406681..1408054 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1406681&end=1408054&gene=dbpA&aa=mtafstlnvlppaqltnlnelgyltmtpvqaaalpailagkdvrvqaktgsgktaafglgllqqidaslfqtqalvlcptreladqvagelrrlarflpntkiltlcggqpfgmqrdslqhaphiivatpgrlldhlqkgtvsldalntlvmdeadrmldmgfsdaiddvirfapasrqtllfsatwpeaiaaisgrvqrdplaieidstdalppieqqfyetsskgkipllqrllslhqpsscvvfcntkkdcqavcdalnevgqsalslhgdleqrdrdqtlvrfangsarvlvatdvaargldikslelvvnfelawdpevhvhrigrtaragnsglaisfcapeeaqraniisdmlqiklnwqtppanssiatleaematlcidggkkakmrpgdvlgaltgdigldgadigkiavhpahvyvavrqavahkawkqlqggkikgktcrvrllk Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dbpA+AND+escherichia+coli Pubmed(dbpA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=dbpA Textpresso(dbpA)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=dbpA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10210]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000204&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=dbpA&loc=MG1655%3A1407535..1408908,W3110%3A1411225..1412598,DH10B%3A1496931..1498304,REL606%3A1406681..1408054,BW2952%3A1299594..1300967]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1299594&end=1300967&gene=dbpA&aa=mtafstlnvlppaqltnlnelgyltmtpvqaaalpailagkdvrvqaktgsgktaafglgllqqidaslfqtqalvlcptreladqvagelrrlarflpntkiltlcggqpfgmqrdslqhaphiivatpgrlldhlqkgtvsldalntlvmdeadrmldmgfsdaiddvirfapasrqtllfsatwpeaiaaisgrvqrdplaieidstdalppieqqfyetsskgkipllqrllslhqpsscvvfcntkkdcqavcdalnevgqsalslhgdleqrdrdqtlvrfangsarvlvatdvaargldikslelvvnfelawdpevhvhrigrtaragnsglaisfcapeeaqraniisdmlqiklnwqtppanssiatleaematlcidggkkakmrpgdvlgaltgdigldgadigkiavhpahvyvavrqavahkawkqlqggkikgktcrvrllk]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dbpA+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=dbpA]]&nbsp;&nbsp;


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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

dbpA

Gene Synonym(s)

ECK1340, b1343, JW1337, rhlC[1], rhlC

Product Desc.

DEAD box RNA helicase and RNA-dependent ATPase[2][3]

ATP-dependent 3'-5' RNA helicase, specific for 23S rRNA[4]

Product Synonyms(s)

ATP-dependent RNA helicase, specific for 23S rRNA[1], B1343[2][1], RhlC[2][1], DbpA[2][1] , ECK1340, JW1337, rhlC, b1343

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): C0343[2]

Regulation/Activity
Quick Links



        

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Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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