dhaR:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''dhaR''  
''dhaR''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1189, b1201, JW5188, ptsD, ycgU''<ref name='LIB:Riley_2006'/>
''ECK1189, b1201, JW5188, ptsD, ycgU''<ref name='LIB:Riley_2006'/>, ycgU''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted DNA-binding transcriptional regulator, dihydroxyacetone<ref name='LIB:Riley_2006'/>, B1201<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcgU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DhaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted DNA-binding transcriptional regulator, dihydroxyacetone<ref name='LIB:Riley_2006'/>, B1201<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcgU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DhaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1189, JW5188, ptsD, ycgU, b1201''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
<GO_nr />
* GO:0006350 transcription ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Molecular Function'''
* GO:0016563 transcription activator activity ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0016564 transcription repressor activity ([http://www.geneontology.org/GO.evidence.shtml IMP])
 
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=dhaR&loc=MG1655:1250289..1252208,W3110:1252643..1254562,DH10B:1290530..1292449,REL606:1251216..1253135 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1251216&end=1253135&gene=dhaR&aa=mrdmsgafnndgrgispliatswercnklmkretwnvphqaqgvtfasiyrrkkamltlgqaaledaweymaprecalfildetacilsrngdpqtlqqlsalgfndgtycaegiigtcalslaaisgqavktmadqhfkqvlwnwafcatplfdskgrltgtialacpveqttaadlpltlaiarevgnllltdsllaetnrhlnqlnallesmddgviswdeqgnlqfinaqaarvlrldatasqgraitelltlpavlqqaikqahplkhveatfesqhqfidavitlkpiietqgtsfilllhpveqmrqlmtsqlgkvshtfahmpqddpqtrrlihfgrqaarssfpvllcgeegvgkallsqaihneseraagpyiavncelygdaalaeefiggdrtdnengrlsrlelahggtlflekieylavelqsallqvikqgvitrldarrlipidvkviatttadlamlveqnrfsrqlyyalhafeitipplrmrrgsipalvnnklrslekrfstrlkidddalarlvscawpgndfelysvienlalssdngrirvsdlpehlfteqatddvsatrlstslsfaevekeaiinaaqvtggriqemsallgigrttlwrkmkqhgidagqfkrrv Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dhaR+AND+escherichia+coli Pubmed(dhaR)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=dhaR Textpresso(dhaR)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=dhaR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6628]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003223&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=dhaR&loc=MG1655%3A1250289..1252208,W3110%3A1252643..1254562,DH10B%3A1290530..1292449,REL606%3A1251216..1253135,BW2952%3A1139010..1140929]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1139010&end=1140929&gene=dhaR&aa=mrdmsgafnndgrgispliatswercnklmkretwnvphqaqgvtfasiyrrkkamltlgqaaledaweymaprecalfildetacilsrngdpqtlqqlsalgfndgtycaegiigtcalslaaisgqavktmadqhfkqvlwnwafcatplfdskgrltgtialacpveqttaadlpltlaiarevgnllltdsllaetnrhlnqlnallesmddgviswdeqgnlqfinaqaarvlrldatasqgraitelltlpavlqqaikqahplkhveatfesqhqfidavitlkpiietqgtsfilllhpveqmrqlmtsqlgkvshtfahmpqddpqtrrlihfgrqaarssfpvllcgeegvgkallsqaihneseraagpyiavncelygdaalaeefiggdrtdnengrlsrlelahggtlflekieylavelqsallqvikqgvitrldarrlipidvkviatttadlamlveqnrfsrqlyyalhafeitipplrmrrgsipalvnnklrslekrfstrlkidddalarlvscawpgndfelysvienlalssdngrirvsdlpehlfteqatddvsatrlstslsfaevekeaiinaaqvtggriqemsallgigrttlwrkmkqhgidagqfkrrv]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dhaR+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=dhaR]]&nbsp;&nbsp;


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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

dhaR

Gene Synonym(s)

ECK1189, b1201, JW5188, ptsD, ycgU[1], ycgU

Product Desc.

DhaR transcriptional dual regulator[2][3]

Transcription activator of the dhaKLM operon[4]

Product Synonyms(s)

predicted DNA-binding transcriptional regulator, dihydroxyacetone[1], B1201[2][1], YcgU[2][1], DhaR[2][1] , ECK1189, JW5188, ptsD, ycgU, b1201

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): dhaR[2]

Regulation/Activity
Quick Links



        

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Notes

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DhaR is an auto-repressor of dhaR transcription. DhaL and DhaK are co-activator and co-repressor, respectively, of DhaR. AAA(+) family.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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