dsdA:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''dsdA''  
''dsdA''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2362, b2366, JW2363''<ref name='LIB:Riley_2006'/>
''ECK2362, b2366, JW2363''<ref name='LIB:Riley_2006'/>, JW2363''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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D-serine ammonia-lyase<ref name='LIB:Riley_2006'/>, B2366<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DsdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''D-serine ammonia-lyase<ref name='LIB:Riley_2006'/>, B2366<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DsdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2362, JW2363, b2366''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
<GO_nr />
* GO:0008721 D-serine ammonia-lyase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016836 hydro-lyase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0030170 pyridoxal phosphate binding ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Biological Process'''
* GO:0070178 D-serine metabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Cellular Component'''
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA])
 
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=dsdA&loc=MG1655:2477224..2478552,W3110:2484648..2485976,REL606:2413429..2414757,DH10B:2568989..2570317 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2568989&end=2570317&gene=dsdA&aa=menakmnsliaqyplvkdlvalkettwfnpgttslaeglpyvglteqdvqdaharlsrfapylakafpetaatggiieselvaipamqkrlekeyqqpisgqlllkkdshlpisgsikarggiyevlahaeklaleaglltldddyskllspefkqffsqysiavgstgnlglsigimsarigfkvtvhmsadarawkkaklrshgvtvveyeqdygvaveegrkaaqsdpncffiddensrtlflgysvagqrlkaqfaqqgrivdadnplfvylpcgvgggpggvafglklafgdhvhcffaepthspcmllgvhtglhdqisvqdigidnltaadglavgrasgfvgramerlldgfytlsdqtmydmlgwlaqeegirlepsalagmagpqrvcasvsyqqmhgfsaeqlrntthlvwatgggmvpeeemnqylakgr Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dsdA+AND+escherichia+coli Pubmed(dsdA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=dsdA Textpresso(dsdA)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=dsdA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10249]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000243&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=dsdA&loc=MG1655%3A2477224..2478552,W3110%3A2484648..2485976,REL606%3A2413429..2414757,DH10B%3A2568989..2570317,BW2952%3A2363029..2364357]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2363029&end=2364357&gene=dsdA&aa=menakmnsliaqyplvkdlvalkettwfnpgttslaeglpyvglteqdvqdaharlsrfapylakafpetaatggiieselvaipamqkrlekeyqqpisgqlllkkdshlpisgsikarggiyevlahaeklaleaglltldddyskllspefkqffsqysiavgstgnlglsigimsarigfkvtvhmsadarawkkaklrshgvtvveyeqdygvaveegrkaaqsdpncffiddensrtlflgysvagqrlkaqfaqqgrivdadnplfvylpcgvgggpggvafglklafgdhvhcffaepthspcmllgvhtglhdqisvqdigidnltaadglavgrasgfvgramerlldgfytlsdqtmydmlgwlaqeegirlepsalagmagpqrvcasvsyqqmhgfsaeqlrntthlvwatgggmvpeeemnqylakgr]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dsdA+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=dsdA]]&nbsp;&nbsp;


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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

dsdA

Gene Synonym(s)

ECK2362, b2366, JW2363[1], JW2363

Product Desc.

D-Serine deaminase[2]

Product Synonyms(s)

D-serine ammonia-lyase[1], B2366[3][1], DsdA[3][1] , ECK2362, JW2363, b2366

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): dsdA[3], dsdXA[3], OP00199, dsd

Regulation/Activity
Quick Links



        

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Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
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