idnR:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''idnR''  
''idnR''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4257, b4264, JW4221, yjgS, gntH, gntS?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK4257, b4264, JW4221, yjgS, gntH, gntS?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, gntS?''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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DNA-binding transcriptional repressor, 5-gluconate-binding product<ref name='LIB:Riley_2006'/>, B4264 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GntH product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjgS product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, IdnR product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''DNA-binding transcriptional repressor, 5-gluconate-binding<ref name='LIB:Riley_2006'/>, B4264<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GntH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjgS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, IdnR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4257, gntH, gntS?, JW4221, yjgS, b4264''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
<GO_nr />
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
 
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=idnR&loc=MG1655:4489162..4488164,W3110:4495819..4494821,DH10B:4590970..4589972,REL606:4474366..4473368 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4474366&end=4473368&gene=idnR&aa=mrnhrislqdiatlagvtkmtvsryirspkkvaketgeriakimeeinyipnrapgmllnaqsytlgilipsfqnqlfadilagiesvtsehnyqtlianynydrdseeesvinllsynidgiilsekyhtirtvkflrsatipvvelmdvqgerldmevgfdnrqaafdmvctmlekrvrhkilylgskddtrdeqryqgycdammlhnlsplrmnpraissihlgmqlmrdalsanpdldgvfctnddiamgalllcrernlavpeqisiagfhgleigrqmipslasvitprfdigrmaaqmllskiknndhnhntvdlgyqiyhgntl Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=idnR+AND+escherichia+coli Pubmed(idnR)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=idnR Textpresso(idnR)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=idnR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7891]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004386&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=idnR&loc=MG1655%3A4489162..4488164,W3110%3A4495819..4494821,DH10B%3A4590970..4589972,REL606%3A4474366..4473368,BW2952%3A4426899..4427897]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4426899&end=4427897&gene=idnR&aa=mrnhrislqdiatlagvtkmtvsryirspkkvaketgeriakimeeinyipnrapgmllnaqsytlgilipsfqnqlfadilagiesvtsehnyqtlianynydrdseeesvinllsynidgiilsekyhtirtvkflrsatipvvelmdvqgerldmevgfdnrqaafdmvctmlekrvrhkilylgskddtrdeqryqgycdammlhnlsplrmnpraissihlgmqlmrdalsanpdldgvfctnddiamgalllcrernlavpeqisiagfhgleigrqmipslasvitprfdigrmaaqmllskiknndhnhntvdlgyqiyhgntl]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=idnR+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=idnR]]&nbsp;&nbsp;


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Latest revision as of 21:49, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

idnR

Gene Synonym(s)

ECK4257, b4264, JW4221, yjgS, gntH, gntS?[1][2], gntS?

Product Desc.

IdnR transcriptional regulator[2][3]

idn operon activator; represses GntR-regulated genes gntKU and gntT[4]

Product Synonyms(s)

DNA-binding transcriptional repressor, 5-gluconate-binding[1], B4264[2][1], GntH[2][1], YjgS[2][1], IdnR[2][1] , ECK4257, gntH, gntS?, JW4221, yjgS, b4264

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): idnR[2], idnDOTR[2], idnD

Regulation/Activity
Quick Links



        

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Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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