lsrF:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''lsrF''  
''lsrF''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1510, b1517, JW1510, yneB''<ref name='LIB:Riley_2006'/>
''ECK1510, b1517, JW1510, yneB''<ref name='LIB:Riley_2006'/>, yneB''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted aldolase<ref name='LIB:Riley_2006'/>, LsrF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YneB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1517<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted aldolase<ref name='LIB:Riley_2006'/>, LsrF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YneB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1517<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1510, JW1510, yneB, b1517''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=lsrF&loc=MG1655:1604124..1604999,W3110:1607814..1608689,DH10B:1693749..1694624,REL606:1572645..1573520 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1572645&end=1573520&gene=lsrF&aa=madlddikdgkdfrtdqpqknipftlkgcgaldwgmqsrlsrifnpktgktvmlafdhgyfqgpttgleridiniaplfehadvlmctrgilrsvvppatnrpvvlrasgansilaelsneavalsmddavrlnscavaaqvyigseyehqsikniiqlvdagmkvgmptmavtgvgkdmvrdqryfslatriaaemgaqiiktyyvekgferivagcpvpiviaggkklperealemcwqaidqgasgvdmgrnifqsdhpvammkavqavvhhnetadrayelylsekq Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=lsrF+AND+escherichia+coli Pubmed(lsrF)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=lsrF Textpresso(lsrF)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=lsrF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6804]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003393&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=lsrF&loc=MG1655%3A1604124..1604999,W3110%3A1607814..1608689,DH10B%3A1693749..1694624,REL606%3A1572645..1573520,BW2952%3A1496183..1497058]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1496183&end=1497058&gene=lsrF&aa=madlddikdgkdfrtdqpqknipftlkgcgaldwgmqsrlsrifnpktgktvmlafdhgyfqgpttgleridiniaplfehadvlmctrgilrsvvppatnrpvvlrasgansilaelsneavalsmddavrlnscavaaqvyigseyehqsikniiqlvdagmkvgmptmavtgvgkdmvrdqryfslatriaaemgaqiiktyyvekgferivagcpvpiviaggkklperealemcwqaidqgasgvdmgrnifqsdhpvammkavqavvhhnetadrayelylsekq]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=lsrF+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=lsrF]]&nbsp;&nbsp;


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Latest revision as of 21:48, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

lsrF

Gene Synonym(s)

ECK1510, b1517, JW1510, yneB[1], yneB

Product Desc.

predicted aldolase[2][3]

Function unknown, involved in AI-2 catabolism[4]

Product Synonyms(s)

predicted aldolase[1], LsrF[2][1], YneB[2][1], B1517[2][1] , ECK1510, JW1510, yneB, b1517

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): lsrACDBFG[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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LsrF is part of an operon for autoinducer-2 (AI-2) uptake regulated by LsrR and LuxS, through AI-2. LsrF is homologous to Bacillus deoxyribose-phosphate aldolase DeoC.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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