ompX:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
update QV table
touch
 
(7 intermediate revisions by the same user not shown)
Line 23: Line 23:
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  
*  
****************************************************************************************** -->{{Quickview_table_help}}
****************************************************************************************** -->
{| id="L49aeeecf57e65"  class=" tableEdit New_Quickview_Table"   
{|   id="L49aeeecf57e65"  class=" tableEdit New_Quickview_Table"   


|-
|-
!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
||
||
''ompX''  
''ompX''
|-
|-
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
Line 43: Line 43:
!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
||
outer membrane protein<ref name='LIB:Riley_2006'/>, B0814<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbiG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OmpP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OmpX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''outer membrane protein<ref name='LIB:Riley_2006'/>, B0814<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbiG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OmpP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OmpX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0803, JW0799, ybiG, b0814''
|-
|-
!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
||
||
 
<GO_nr />
|-
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
Line 63: Line 63:
!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
||
||
[http://ecoliwiki.net/tools/display_dna.php?gene=ompX&loc=MG1655:849673..850188,W3110:850872..851387,DH10B:903601..904116,REL606:843075..843590 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=843075&end=843590&gene=ompX&aa=mkkiaclsalaavlaftagtsvaatstvtggyaqsdaqgqmnkmggfnlkyryeednsplgvigsftyteksrtassgdynknqyygitagpayrindwasiygvvgvgygkfqtteyptykhdtsdygfsygaglqfnpmenvaldfsyeqsrirsvdvgtwiagvgyrf Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ompX+AND+escherichia+coli Pubmed(ompX)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ompX Textpresso(ompX)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ompX&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12117]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002021&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ompX&loc=MG1655%3A849673..850188,W3110%3A850872..851387,DH10B%3A903601..904116,REL606%3A843075..843590,BW2952%3A752641..753156]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=752641&end=753156&gene=ompX&aa=mkkiaclsalaavlaftagtsvaatstvtggyaqsdaqgqmnkmggfnlkyryeednsplgvigsftyteksrtassgdynknqyygitagpayrindwasiygvvgvgygkfqtteyptykhdtsdygfsygaglqfnpmenvaldfsyeqsrirsvdvgtwiagvgyrf]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ompX+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ompX]]&nbsp;&nbsp;


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Latest revision as of 21:47, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ompX

Gene Synonym(s)

ECK0803, b0814, JW0799, ompP, ybiG, G8003[1][2]

Product Desc.

outer membrane protein X[2][3]

Outer membrane protein X; role in inducing RNAP-sigma E production[4]

Product Synonyms(s)

outer membrane protein[1], B0814[2][1], YbiG[2][1], OmpP[2][1], OmpX[2][1] , ECK0803, JW0799, ybiG, b0814

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ompX[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


ompX is nduced by acid or base. OmpX is regulated by cyaR sRNA (De Lay, 2009).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ompX:Quickview&oldid=1396249"