hicB:Quickview: Difference between revisions

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Quickview

Standard Name	hicB
Gene Synonym(s)	ECK1432, b1438, JW1433, ydcQ^[1], JW1433, ydcQ
Product Desc.	hypothetical protein^[2]; predicted DNA-binding transcriptional regulator^[3] Antitoxin for the YncN(HicA) mRNA interferase toxin; mutational suppressor of null rpoE lethality^[4]
Product Synonyms(s)	predicted DNA-binding transcriptional regulator^[1], B1438^[2]^[1], HicB^[2]^[1] , ECK1432, JW1433, ydcQ, b1438
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): yncN^[2]
Regulation/Activity
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Notes

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IS insertions in ydcQ were isolated as suppressors of rpoE lethality; in wt cells, ydcQ mutants downregulate extracytoplasmic stress responses and OM vesicle production is reduced (Button, 2006). A longer 145 aa translation is unlikely due to a poor RBS and a lack of seqeunce conservation.^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

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@@ Line 10: / Line 10: @@
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 <noinclude>{{TabsTop}}
-{{Tab On|Quickview|ydcQ}}{{Tab|Gene|ydcQ}}{{Tab|Gene Product(s)|ydcQ}}{{Tab|Expression|ydcQ}}{{Tab|Evolution|ydcQ}}{{Tab|On One Page|ydcQ}}{{TabsBottom}}
+{{Tab On|Quickview|hicB}}{{Tab|Gene|hicB}}{{Tab|Gene Product(s)|hicB}}{{Tab|Expression|hicB}}{{Tab|Evolution|hicB}}{{Tab|On One Page|hicB}}{{TabsBottom}}
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 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->{{Quickview_table_help}}
+****************************************************************************************** -->
-{|  id="I49b02c8dcbb68"  class=" tableEdit New_Quickview_Table"
+{|   id="I49b02c8dcbb68"  class=" tableEdit New_Quickview_Table"
 |-
 !align=left {{table_heading_style}} |Standard Name
 ||
-''ydcQ''
+''hicB''
 |-
 !align=left {{table_heading_style}} |Gene Synonym(s)
 ||
-''ECK1432, b1438, JW1433''<ref name='LIB:Riley_2006'/>
+''ECK1432, b1438, JW1433'', ydcQ<ref name='LIB:Riley_2006'/>, JW1433, ydcQ''
 |-
 !align=left {{table_heading_style}} |Product Desc.
@@ Line 43: / Line 43: @@
 !align=left {{table_heading_style}} |Product Synonyms(s)
 ||
-predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1438<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdcQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1438<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HicB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1432, JW1433, ydcQ, b1438''
 |-
 !align=left {{table_heading_style}} |Function from GO
 ||
-'''Biological Process'''
+<GO_nr />
-* GO:0006950 response to stress ([http://www.geneontology.org/GO.evidence.shtml IGI])
 |-
 !align=left {{table_heading_style}} |Knock-Out Phenotype
@@ Line 65: / Line 63: @@
 !align=left {{table_heading_style}} |Quick Links
 ||
-[http://ecoliwiki.net/tools/display_dna.php?gene=ydcQ&loc=MG1655:1507511..1507948,W3110:1511201..1511638,DH10B:1598106..1598543,REL606:1479597..1480034 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1479597&end=1480034&gene=ydcQ&aa=mretveimrypvtltpapeggymvsfvdipealtqgetvaeameaakdalltafdfyfedneliplpsplnshdhfievplsvaskvlllnaflqseitqqelarrigkpkqeitrlfnlhhatkidavqlaakalgkelslvmv Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydcQ+AND+escherichia+coli Pubmed(ydcQ)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ydcQ Textpresso(ydcQ)]
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ydcQ&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ydcQ&loc=MG1655%3A1507511..1507948,W3110%3A1511201..1511638,DH10B%3A1598106..1598543,REL606%3A1479597..1480034,BW2952%3A1399591..1400007]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1399591&end=1400007&gene=ydcQ&aa=mretveimrypvtltpapeggymvsfvdipealtqgetvaeameaakdalltafdfyfedneliplpsplnshdhfievplsvaskvlllnaflqseitqqelarrigkpkqeitrlfnlhhatkidavqlaakalgkelslvmv]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydcQ+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ydcQ]]&nbsp;&nbsp;
 |- class="tableEdit_footer"

hicB:Quickview: Difference between revisions

Latest revision as of 21:43, 27 May 2013

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