yjiR:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''yjiR''  
''yjiR''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4331, b4340, JW4303''<ref name='LIB:Riley_2006'/>
''ECK4331, b4340, JW4303''<ref name='LIB:Riley_2006'/>, JW4303''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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fused predicted DNA-binding transcriptional regulator product<ref name='LIB:Riley_2006'/>, predicted aminotransferase product<ref name='LIB:Riley_2006'/>, B4340 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjiR product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''fused predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, predicted aminotransferase<ref name='LIB:Riley_2006'/>, B4340<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjiR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4331, JW4303, b4340''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
<GO_nr />
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
 
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=yjiR&loc=MG1655:4569597..4568185,W3110:4576254..4574842 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4576254&end=4574842&gene=yjiR&aa=mtryqhlatllaerieqglyrhgeklpsvrslsqehgvsistvqqayqtletmklitpqprsgyfvaqrkaqppvppmtrpvqrpveitqwdqvldmleahsdssivplskstpdveapslkplwrelsrvvqhnlqtvlgydllagqrvlreqiarlmldsgsvvtaddiiitsgchnsmslalmavckpgdivavespcyygsmqmlrgmgvkvieiptdpetgisvealelaleqwpikgiilvpncnnplgfimpdarkravlslaqrhdivifeddvygelateyprprtihswdidgrvllcssfsksiapglrvgwvapgryhdklmhmkyaissfnvpstqmaaatfvleghyhrhirrmrqiyqrnlalytcwireyfpceicitrpkggfllwielpeqvdmvcvarqlcrmkiqvaagsifsasgkyrnclrincalplsetyrealkqigeavyrame Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yjiR+AND+escherichia+coli Pubmed(yjiR)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=yjiR Textpresso(yjiR)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yjiR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7936]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004431&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yjiR&loc=MG1655%3A4569597..4568185,W3110%3A4576254..4574842,BW2952%3A4506669..4508081]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4506669&end=4508081&gene=yjiR&aa=mtryqhlatllaerieqglyrhgeklpsvrslsqehgvsistvqqayqtletmklitpqprsgyfvaqrkaqppvppmtrpvqrpveitqwdqvldmleahsdssivplskstpdveapslkplwrelsrvvqhnlqtvlgydllagqrvlreqiarlmldsgsvvtaddiiitsgchnsmslalmavckpgdivavespcyygsmqmlrgmgvkvieiptdpetgisvealelaleqwpikgiilvpncnnplgfimpdarkravlslaqrhdivifeddvygelateyprprtihswdidgrvllcssfsksiapglrvgwvapgryhdklmhmkyaissfnvpstqmaaatfvleghyhrhirrmrqiyqrnlalytcwireyfpceicitrpkggfllwielpeqvdmvcvarqlcrmkiqvaagsifsasgkyrnclrincalplsetyrealkqigeavyrame]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yjiR+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yjiR]]&nbsp;&nbsp;


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Latest revision as of 21:40, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yjiR

Gene Synonym(s)

ECK4331, b4340, JW4303[1], JW4303

Product Desc.

putative regulator[2][3]

Putative HTH transcriptional regulator with aminotransferase domain, function unknown; MocR family[4]

Product Synonyms(s)

fused predicted DNA-binding transcriptional regulator[1], predicted aminotransferase[1], B4340[2][1], YjiR[2][1] , ECK4331, JW4303, b4340

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yjiR[2]

Regulation/Activity
Quick Links



        

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Notes

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AFMB Structural Genomics target No. 74 (http://afmb.cnrs-mrs.fr/article171.html).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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