yncD:Quickview: Difference between revisions

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{| id="P49b034fd79064"  class=" tableEdit New_Quickview_Table"   
{|   id="P49b034fd79064"  class=" tableEdit New_Quickview_Table"   


|-
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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''yncD''  
''yncD''
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1445, b1451, JW1446''<ref name='LIB:Riley_2006'/>
''ECK1445, b1451, JW1446''<ref name='LIB:Riley_2006'/>, JW1446''
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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probable TonB-dependent receptor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
probable TonB-dependent receptor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
Line 41: Line 41:
Putative TonB-dependent outer membrane receptor<ref name='LIB:EcoGene'/>
Putative TonB-dependent outer membrane receptor<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted iron outer membrane transporter<ref name='LIB:Riley_2006'/>, B1451<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YncD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted iron outer membrane transporter<ref name='LIB:Riley_2006'/>, B1451<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YncD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1445, JW1446, b1451''
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yncD|yncD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yncD|yncD]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
||
||


|-
!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yncD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6762]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003351&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yncD&loc=MG1655%3A1521089..1518987,W3110%3A1524779..1522677,DH10B%3A1611684..1609582,REL606%3A1493175..1491073,BW2952%3A1411046..1413148]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1411046&end=1413148&gene=yncD&aa=mkifsvrqtvlpallvlspvvfaadeqtmivsaapqvvseldtpaavsvvdgeemrlatprinlsesltgvpglqvqnrqnyaqdlqlsirgfgsrstygirgirlyvdgipatmpdgqgqtsnidlssvqnvevlrgpfsalygnasggvmnvttqtgqqpptieassyygsfgswryglkatgatgdgtqpgdvdytvsttrftthgyrdhsgaqknlanaklgvrideasklslifnsvdikaddpggltkaewkanpqqapraeqydtrktikqtqaglryerslssrddmsvmmyagerettqyqsipmapqlnpshaggvitlqrhyqgidsrwthrgelgvpvtfttglnyenmsenrkgynnfrlnsgmpeygqkgelrrdernlmwnidpylqtqwqlseklsldagvryssvwfdsndhyvtpgngddsgdasyhkwlpagslkyamtdawniylaagrgfetptinelsyradgqsgmnlglkpstndtieigsktrigdgllslalfqtdtddeivvdsssggrttyknagktrrqgaelawdqrfagdfrvnaswtwldatyrsnvcneqdcngnrmpgiarnmgfasigyvpedgwyagtearymgdimaddentakapsytlvglftgykynyhnltvdlfgrvdnlfdkeyvgsvivnesngryyepspgrnygvgmniawrfe]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yncD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yncD]]&nbsp;&nbsp;


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Latest revision as of 21:39, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yncD

Gene Synonym(s)

ECK1445, b1451, JW1446[1], JW1446

Product Desc.

probable TonB-dependent receptor[2][3]

Putative TonB-dependent outer membrane receptor[4]

Product Synonyms(s)

predicted iron outer membrane transporter[1], B1451[2][1], YncD[2][1] , ECK1445, JW1446, b1451

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yncD[2]

Regulation/Activity
Quick Links



        

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Notes

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yncD and fhuA are paralogs.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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