yicR:Quickview: Difference between revisions

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{|   id="P49b032816da54"  class=" tableEdit New_Quickview_Table"   


|-
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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''yicR''  
''yicR''
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3628, b3638, JW5643, radC''<ref name='LIB:Riley_2006'/>
''ECK3628, b3638, JW5643, radC''<ref name='LIB:Riley_2006'/>, radC''
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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hypothetical protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
hypothetical protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
Line 41: Line 41:
Function unknown; mistakenly thought to be allelic to radC102 (corrected by Lombardo, 2000)<ref name='LIB:EcoGene'/>
Function unknown; mistakenly thought to be allelic to radC102 (corrected by Lombardo, 2000)<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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protein associated with replication fork, possible DNA repair protein<ref name='LIB:Riley_2006'/>, B3638<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YicR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RadC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''protein associated with replication fork, possible DNA repair protein<ref name='LIB:Riley_2006'/>, B3638<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YicR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RadC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3628, JW5643, radC, b3638''
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yicR-rpmBG|yicR-rpmBG]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:yicR-rpmBG-mutM|yicR-rpmBG-mutM]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yicR-rpmBG|yicR-rpmBG]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:yicR-rpmBG-mutM|yicR-rpmBG-mutM]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
||
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yicR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11312]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001283&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yicR&loc=MG1655%3A3810582..3809914,W3110%3A3827856..3828524,DH10B%3A3908159..3907491,REL606%3A3750246..3750914,BW2952%3A3698240..3698908]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3698240&end=3698908&gene=yicR&aa=mkvknnsqllmprekmlkfgisaltdvellalflrtgtrgkdvltlakemlenfgslyglltseyeqfsgvhgigvakfaqlkgiaelarryynvrmreespllspemtreflqsqltgeereifmvifldsqhrvithrrlfsgtlnhvevhpreiireaikinasalilahnhpsgcaepskadkliteriikscqfmdlrvldhivigrgeyvsfaergwi]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yicR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yicR]]&nbsp;&nbsp;


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Latest revision as of 21:40, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yicR

Gene Synonym(s)

ECK3628, b3638, JW5643, radC[1], radC

Product Desc.

hypothetical protein[2][3]

Function unknown; mistakenly thought to be allelic to radC102 (corrected by Lombardo, 2000)[4]

Product Synonyms(s)

protein associated with replication fork, possible DNA repair protein[1], B3638[2][1], YicR[2][1], RadC[2][1] , ECK3628, JW5643, radC, b3638

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yicR-rpmBG[2], yicR-rpmBG-mutM[2]

Regulation/Activity
Quick Links



        

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Notes

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yicR is paralogous to cryptic prophage genes yfjY, ykfG, yeeS, although they lack the N-terminal helix-hairpin-helix (HhH) domain of YicR. CreBC regulon. yicR is predicted to have a CRP-S promoter co-regulated by both Crp and Sxy (Cameron, 2006).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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