ydiN:Quickview: Difference between revisions

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|-
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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''ydiN''  
''ydiN''
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1689, b1691, JW5274''<ref name='LIB:Riley_2006'/>
''ECK1689, b1691, JW5274''<ref name='LIB:Riley_2006'/>, JW5274''
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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YdiN MFS transporter<ref name='LIB:EcoCyc10.6'/>; putative amino acid/amine MFS transporter<ref name='LIB:EcoCyc11.1'/>
YdiN MFS transporter<ref name='LIB:EcoCyc10.6'/>; putative amino acid/amine MFS transporter<ref name='LIB:EcoCyc11.1'/>
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Putative transporter, function unknown; membrane protein; upregulated in shikimate-producer during carbon starvation<ref name='LIB:EcoGene'/>
Putative transporter, function unknown; membrane protein; upregulated in shikimate-producer during carbon starvation<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted transporter<ref name='LIB:Riley_2006'/>, B1691<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdiN<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted transporter<ref name='LIB:Riley_2006'/>, B1691<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdiN<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1689, JW5274, b1691''
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ydiN|ydiN]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ydiN|ydiN]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
||
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ydiN&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6917]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003505&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ydiN&loc=MG1655%3A1770536..1771801,W3110%3A1774226..1775491,DH10B%3A1861107..1862372,REL606%3A1749778..1751043,BW2952%3A1662589..1663860]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1662589&end=1663860&gene=ydiN&aa=mkmsqnkafstpfilavlciyfsyflhgisvitlaqnmsslaekfstdnagiaylisgiglgrlisilffgvisdkfgrravilmavimyllfffgipacpnltlayglavcvgiansaldtggypalmecfpkasgsavilvkamvsfgqmfypmlvsymllnniwygygliipgilfvlitlmllkskfpsqlvdasvtnelpqmnskplvwlegvssvlfgvaafstfyvivvwmpkyamafagmseaealktisyysmgslvcvfifaallkkmvrpiwanvfnsalatitaaiiylypsplvcnagafvigfsaaggilqlgvsvmseffpkskakvtsiymmmgglanfviplitgylsniglqyiivldftfallalitaiivfiryyrvfiipendvrfgerkfctrlntikhrg]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydiN+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ydiN]]&nbsp;&nbsp;


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Latest revision as of 21:42, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ydiN

Gene Synonym(s)

ECK1689, b1691, JW5274[1], JW5274

Product Desc.

YdiN MFS transporter[2]; putative amino acid/amine MFS transporter[3]

Putative transporter, function unknown; membrane protein; upregulated in shikimate-producer during carbon starvation[4]

Product Synonyms(s)

predicted transporter[1], B1691[2][1], YdiN[2][1] , ECK1689, JW5274, b1691

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ydiN[2]

Regulation/Activity
Quick Links



        

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Notes

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Major Facilitator Superfamily (MFS). YdiN is upregulated in shikimate-producer during carbon starvation (Johansson, 2006). ydiN is in an operon with shikimate genes ydiB and aroD. YdiN may be involved in the transport of shikimate or byproducts (quinic acid and 3-dehydroshikimic acid) of its overproduction: a second transport system for shikimate has not yet been mapped (Brown, 1976; Knop, 2001).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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