ssb:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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|-
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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''ssb''  
''ssb''
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4051, b4059, JW4020, exrB, lexC''<ref name='LIB:Riley_2006'/>
''ECK4051, b4059, JW4020, exrB, lexC''<ref name='LIB:Riley_2006'/>, lexC''
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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ssDNA-binding protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
ssDNA-binding protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Single-stranded DNA-binding protein; alkali-inducible; homotetramer<ref name='LIB:EcoGene'/>
Single-stranded DNA-binding protein; alkali-inducible; homotetramer<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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Single-stranded DNA-binding protein<ref name='LIB:Riley_2006'/>, B4059<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LexC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ExrB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ssb<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''Single-stranded DNA-binding protein<ref name='LIB:Riley_2006'/>, B4059<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LexC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ExrB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ssb<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4051, exrB, JW4020, lexC, b4059''
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
||
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transcription unit(s): [[:Category:Txn_unit:ssb|ssb]]<ref name='LIB:EcoCyc10.6'/>, OP00091  
transcription unit(s): [[:Category:Txn_unit:ssb|ssb]]<ref name='LIB:EcoCyc10.6'/>, OP00091  
|-
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
||
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ssb&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10976]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000965&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ssb&loc=MG1655%3A4272148..4272684,W3110%3A4277715..4278251,REL606%3A4253058..4253594,DH10B%3A4371844..4372380,BW2952%3A4210993..4211529]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4210993&end=4211529&gene=ssb&aa=masrgvnkvilvgnlgqdpevrympnggavanitlatseswrdkatgemkeqtewhrvvlfgklaevaseylrkgsqvyiegqlrtrkwtdqsgqdryttevvvnvggtmqmlggrqgggapaggnigggqpqggwgqpqqpqggnqfsggaqsrpqqsapaapsneppmdfdddipf]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ssb+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ssb]]&nbsp;&nbsp;


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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ssb

Gene Synonym(s)

ECK4051, b4059, JW4020, exrB, lexC[1], lexC

Product Desc.

ssDNA-binding protein[2][3]

Single-stranded DNA-binding protein; alkali-inducible; homotetramer[4]

Product Synonyms(s)

Single-stranded DNA-binding protein[1], B4059[2][1], LexC[2][1], ExrB[2][1], Ssb[2][1] , ECK4051, exrB, JW4020, lexC, b4059

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ssb[2], OP00091

Regulation/Activity
Quick Links



        

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Notes

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SSB binds to RecQ and stimulates DNA unwinding (Shereda, 2007). Secondary structure of DNA does not effect binding of SSB. SSB increases the binding of RecA in DNA with secondary structure. LexA regulon.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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