rcnR:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''rcnR''  
''rcnR''
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''yohL, ECK2098, b2105, JW2092''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''yohL, ECK2098, b2105, JW2092''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, JW2092''
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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DNA-binding transcriptional regulator<ref name='LIB:EcoCyc10.6'/>; RcnR transcriptional repressor<ref name='LIB:EcoCyc11.1'/>
DNA-binding transcriptional regulator<ref name='LIB:EcoCyc10.6'/>; RcnR transcriptional repressor<ref name='LIB:EcoCyc11.1'/>
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Transcriptional repressor of rcnA; nickel- and cobalt-responsive<ref name='LIB:EcoGene'/>
Transcriptional repressor of rcnA; nickel- and cobalt-responsive<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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conserved protein<ref name='LIB:Riley_2006'/>, B2105<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YohL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RcnR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''conserved protein<ref name='LIB:Riley_2006'/>, B2105<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YohL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RcnR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2098, JW2092, yohL, b2105''
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yohL|yohL]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yohL|yohL]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rcnR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7137]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003719&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rcnR&loc=MG1655%3A2183818..2183546,W3110%3A2189130..2188858,DH10B%3A2274826..2274554,BW2952%3A2076029..2076301]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2076029&end=2076301&gene=rcnR&aa=mshtirdkqklkaraskiqgqvvalkkmldephecaavlqqiaairgavnglmrevikghltehivhqgdelkreedldvvlkvldsyik]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rcnR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rcnR]]&nbsp;&nbsp;


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Latest revision as of 21:43, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rcnR

Gene Synonym(s)

yohL, ECK2098, b2105, JW2092[1][2], JW2092

Product Desc.

DNA-binding transcriptional regulator[2]; RcnR transcriptional repressor[3]

Transcriptional repressor of rcnA; nickel- and cobalt-responsive[4]

Product Synonyms(s)

conserved protein[1], B2105[2][1], YohL[2][1], RcnR[2][1] , ECK2098, JW2092, yohL, b2105

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yohL[2]

Regulation/Activity
Quick Links



        

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Notes

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The RcnR-rcnA promoter interaction is inhibited by nickel and cobalt; an rcnR mutant constitutively expresses rcnA (Iwig, 2006). rcnR and frmR are paralogs.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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