racR:Quickview: Difference between revisions
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{| | {| id="N49b0219d67a89" class=" tableEdit New_Quickview_Table" | ||
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''racR'' | ''racR'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK1354, b1356, JW1351, ydaR, rarC''<ref name='LIB:Riley_2006'/> | ''ECK1354, b1356, JW1351, ydaR, rarC''<ref name='LIB:Riley_2006'/>, cohR'' | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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hypothetical protein<ref name='LIB:EcoCyc10.6'/>; hypothetical protein; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/> | hypothetical protein<ref name='LIB:EcoCyc10.6'/>; hypothetical protein; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/> | ||
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Rac prophage repressor, cI-like<ref name='LIB:EcoGene'/> | Rac prophage repressor, cI-like<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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Rac prophage; predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1356<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RacR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RarC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''Rac prophage; predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1356<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RacR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RarC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , cohR, ECK1354, JW1351, ydaR, b1356'' | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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<GO_nr /> | |||
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!align=left {{table_heading_style}} |Knock-Out Phenotype | |||
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!align=left | !align=left {{table_heading_style}} |Regulation/Expression | ||
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transcription unit(s): [[:Category:Txn_unit:racR|racR]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:racR|racR]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=racR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6680]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003275&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=racR&loc=MG1655%3A1418265..1417789,W3110%3A1421955..1421479,DH10B%3A1507661..1507185,BW2952%3A1309848..1310324]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1309848&end=1310324&gene=racR&aa=mlsgkdlgraieqainkkiasgsvkskaevarhfkvqppsiydwikkgsiskdklpelwrffsdvvgpehwglneypiptptnsdtkselldinnlyqaasdeiraivafllsgnatepdwvdhdvrayiaamemkvgkylkaleserksqnitktgt]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=racR+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=racR]] | |||
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Latest revision as of 21:54, 27 May 2013
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
racR |
|---|---|
| Gene Synonym(s) |
ECK1354, b1356, JW1351, ydaR, rarC[1], cohR |
| Product Desc. |
hypothetical protein[2]; hypothetical protein; predicted DNA-binding transcriptional regulator[3] Rac prophage repressor, cI-like[4] |
| Product Synonyms(s) |
Rac prophage; predicted DNA-binding transcriptional regulator[1], B1356[2][1], RacR[2][1], YdaR[2][1], RarC[2][1] , cohR, ECK1354, JW1351, ydaR, b1356 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
racR encodes a function repressor of the Rac prophage, personal communications, A.J. Clark, February, 1994, (preliminary results), and June, 1998. Rac integrase and repressor function and the Rac prophage can be induced to excise from the E. coli chromosome, but does not form viable virions. racR was identified in a personal communication of unpublished DNA sequence (2527 bp) and annotation from A.J. Clark, H. Samra, J. Li, C.C. Chu, C.S. Laufer and J.B. Hays, November, 1993; revised June, 1996.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.