fimC:Quickview: Difference between revisions

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Quickview

Standard Name	fimC
Gene Synonym(s)	ECK4307, b4316, JW4279, pil, pilB, pilC^[1]^[2]
Product Desc.	periplasmic chaperone, required for type 1 fimbriae^[2]^[3] Periplasmic chaperone for type 1 fimbriae; FimCD chaperone-usher transport^[4]
Product Synonyms(s)	chaperone, periplasmic^[1], B4316^[2]^[1], PilC^[2]^[1], PilB^[2]^[1], FimC^[2]^[1] , ECK4307, JW4279, b4316
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): fimAICDFGH^[2]
Regulation/Activity
Quick Links
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Notes

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FimC has Ig-like domains: pfam PF00345 aligns to N-terminal residues 37-157, and pfam PF02753 aligns to C-terminal residues 161-237. First 36 aa are a type I signal peptide.^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

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[2]

[3]

[4]

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+-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
 <noinclude>{{TabsTop}}
 {{Tab On|Quickview|fimC}}{{Tab|Gene|fimC}}{{Tab|Gene Product(s)|fimC}}{{Tab|Expression|fimC}}{{Tab|Evolution|fimC}}{{Tab|On One Page|fimC}}{{TabsBottom}}
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+{|   id="R49aee5909b1c1"  class=" tableEdit New_Quickview_Table"
 |-
-!{{table_heading_style}} |Gene Name
+!align=left {{table_heading_style}} |Standard Name
-|
+||
-[[fimC:Gene|''fimC]]'' (synonyms: ''ECK4307, b4316, JW4279, pil, pilB, pilC'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
+''fimC''
 |-
-!{{table_heading_style}} |Product(s)
+!align=left {{table_heading_style}} |Gene Synonym(s)
-|
+||
-[[fimC:Gene_Product(s)|FimC product]]<ref name='LIB:Riley_2006'/>: chaperone, periplasmic product, B4316 product, PilC product, PilB product
+''ECK4307, b4316, JW4279, pil, pilB, pilC''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table_heading_style}} |Description
+!align=left {{table_heading_style}} |Product Desc.
-|
+||
 periplasmic chaperone, required for type 1 fimbriae<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Periplasmic chaperone for type 1 fimbriae; FimCD chaperone-usher transport<ref name='LIB:EcoGene'/>
+|-
+!align=left {{table_heading_style}} |Product Synonyms(s)
+||
+''chaperone, periplasmic<ref name='LIB:Riley_2006'/>, B4316<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PilC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PilB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FimC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4307, JW4279, b4316''
+|-
+!align=left {{table_heading_style}} |Function from GO
+||
+<GO_nr />
 |-
-!{{table_heading_style}} |Knock-Out Phenotype
+!align=left {{table_heading_style}} |Knock-Out Phenotype
-|
+||
 |-
-!{{table_heading_style}} |Regulation/Expression
+!align=left {{table_heading_style}} |Regulation/Expression
-|
+||
 transcription unit(s): [[:Category:Txn_unit:fimAICDFGH|fimAICDFGH]]<ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table_heading_style}} |Regulation/Activity
+!align=left {{table_heading_style}} |Regulation/Activity
-|
+||
 |-
-|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..E469f916c9067a&page=&pagename={{FULLPAGENAMEE}} edit table]
+!align=left {{table_heading_style}} |Quick Links
+||
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=fimC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10310]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000304&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=fimC&loc=MG1655%3A4542327..4543052,W3110%3A4548984..4549709,REL606%3A4525218..4525943,BW2952%3A4480812..4481537]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4480812&end=4481537&gene=fimC&aa=msnknvnvrksqeitfcllagilmfmammvagraeagvalgatrviypagqkqeqlavtnndenstyliqswvenadgvkdgrfivtpplfamkgkkentlrildatnnqlpqdreslfwmnvkaipsmdkskltentlqlaiisriklyyrpaklalppdqaaeklrfrrsansltlinptpyyltvtelnagtrvlenalvppmgestvklpsdagsnityrtindygaltpkmtgvme]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=fimC+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=fimC]]&nbsp;&nbsp;
+|- class="tableEdit_footer"
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 <protect><!--Quickview_notes--></protect>
-==Notes==
+===Notes===
+{{BacktoTop}}
+FimC has Ig-like domains: pfam PF00345 aligns to N-terminal residues 37-157, and pfam PF02753 aligns to C-terminal residues 161-237. First 36 aa are a type I signal peptide.<ref name='LIB:EcoGene'/>
 <noinclude>
 ==References==
+{{BacktoTop}}
 <references/>
 </noinclude>

fimC:Quickview: Difference between revisions

Latest revision as of 21:50, 27 May 2013

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