bamD:Quickview: Difference between revisions

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{|   id="R4a79c4f1d30cd" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[bamD:Gene|''bamD]]'' (synonyms: ''[[bamD:Gene_Product(s)|YfiO product]]<ref name='LIB:Riley_2006'/>: predicted lipoprotein product, B2595 product, EcfD product; BamD product<ref name='LIB:EcoGene'/>, yfiO'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoGene'/>
''bamD''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[bamD:Gene_Product(s)|YfiO product]]<ref name='LIB:Riley_2006'/>: predicted lipoprotein product, B2595 product, EcfD product; BamD product<ref name='LIB:EcoGene'/>, yfiO product
''ECK2593, b2595, JW2577, ecfD, bamD'', yfiO<ref name='LIB:Riley_2006'/><ref name='LIB:EcoGene'/>, yfiO''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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YfiO<ref name='LIB:EcoCyc10.6'/> YfiO-lipoprotein component of outer membrane protein assembly complex<ref name='LIB:EcoCyc11.1'/>  
YfiO<ref name='LIB:EcoCyc10.6'/>; YfiO-lipoprotein component of outer membrane protein assembly complex<ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:Outer Membrane Protein Assembly Complex|Outer Membrane Protein Assembly Complex]]<ref name='LIB:EcoCyc11.1'/>
Component of [[:Category:Complex:Outer Membrane Protein Assembly Complex|Outer Membrane Protein Assembly Complex]]<ref name='LIB:EcoCyc11.1'/>


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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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essential gene <ref name=PMID:16824102/>,<ref name=PMID:15968066/>
''predicted lipoprotein<ref name='LIB:Riley_2006'/>, B2595<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EcfD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfiO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BamD <ref name='LIB:EcoGene'/>, ecfD, ECK2593, JW2577, yfiO, b2595''
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Function from GO
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transcription unit(s): [[:Category:Txn_unit:bamD|bamD]]<ref name='LIB:EcoCyc10.6'/>
<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=bamD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7352]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003921&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=bamD&loc=MG1655%3A2734168..2734905,W3110%3A2734802..2735539,BW2952%3A2619980..2620717]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2619980&end=2620717&gene=bamD&aa=mtrmkylvaaatlslflagcsgskeevpdnppneiyataqqklqdgnwrqaitqlealdnrypfgpysqqvqldliyayyknadlplaqaaidrfirlnpthpnidyvmymrgltnmalddsalqgffgvdrsdrdpqharaafsdfsklvrgypnsqyttdatkrlvflkdrlakyeysvaeyytergawvavvnrvegmlrdypdtqatrdalplmenayrqmqmnaqaekvakiiaanssnt]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=bamD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=bamD]]&nbsp;&nbsp;


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Latest revision as of 21:56, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

bamD

Gene Synonym(s)

ECK2593, b2595, JW2577, ecfD, bamD, yfiO[1][2], yfiO

Product Desc.

YfiO[3]; YfiO-lipoprotein component of outer membrane protein assembly complex[4];

Component of Outer Membrane Protein Assembly Complex[4]

Product Synonyms(s)

predicted lipoprotein[1], B2595[3][1], EcfD[3][1], YfiO[3][1], BamD [2], ecfD, ECK2593, JW2577, yfiO, b2595

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

A consensus has been reached for renaming the genes that encode components of the outer membrane β-barrel assembly machine, (formerly known as the YaeT complex of E. coli or the Omp85 complex of N. meningitidis). The new designation for this multi-component structure is the Bam complex (for beta-barrel assembly machine).

The Bam complex in E. coli consists of BamA (YaeT), BamB (YfgL), BamC (NlpB), BamD (YfiO), and BamE (SmpA). Letters have been assigned on the basis of molecular weight, from highest to lowest [2].

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
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