bamD:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
touch QV table
touch
 
(2 intermediate revisions by the same user not shown)
Line 23: Line 23:
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  
*  
****************************************************************************************** -->{{Quickview_table_help}}
****************************************************************************************** -->
{|  id="R4a79c4f1d30cd"  class=" tableEdit New_Quickview_Table"   
{|  id="R4a79c4f1d30cd"  class=" tableEdit New_Quickview_Table"   


Line 33: Line 33:
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
''ECK2593, b2595, JW2577, ecfD, bamD'', yfiO<ref name='LIB:Riley_2006'/><ref name='LIB:EcoGene'/>
''ECK2593, b2595, JW2577, ecfD, bamD'', yfiO<ref name='LIB:Riley_2006'/><ref name='LIB:EcoGene'/>, yfiO''
|-
|-
!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
Line 44: Line 44:
!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
||
predicted lipoprotein<ref name='LIB:Riley_2006'/>, B2595<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EcfD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfiO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BamD <ref name='LIB:EcoGene'/>
''predicted lipoprotein<ref name='LIB:Riley_2006'/>, B2595<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EcfD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfiO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BamD <ref name='LIB:EcoGene'/>, ecfD, ECK2593, JW2577, yfiO, b2595''
|-
|-
!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
Line 64: Line 64:
!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
||
||
[http://porteco.org/AjaxSearch.jsp?searchString=bamD&s=search PortEco search(bamD)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=bamD&loc=MG1655:2734168..2734905,W3110:2734802..2735539,BW2952:2619980..2620717 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2619980&end=2620717&gene=bamD&aa=mtrmkylvaaatlslflagcsgskeevpdnppneiyataqqklqdgnwrqaitqlealdnrypfgpysqqvqldliyayyknadlplaqaaidrfirlnpthpnidyvmymrgltnmalddsalqgffgvdrsdrdpqharaafsdfsklvrgypnsqyttdatkrlvflkdrlakyeysvaeyytergawvavvnrvegmlrdypdtqatrdalplmenayrqmqmnaqaekvakiiaanssnt Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=bamD+AND+escherichia+coli Pubmed(bamD)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=bamD Textpresso(bamD)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=bamD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7352]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003921&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=bamD&loc=MG1655%3A2734168..2734905,W3110%3A2734802..2735539,BW2952%3A2619980..2620717]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2619980&end=2620717&gene=bamD&aa=mtrmkylvaaatlslflagcsgskeevpdnppneiyataqqklqdgnwrqaitqlealdnrypfgpysqqvqldliyayyknadlplaqaaidrfirlnpthpnidyvmymrgltnmalddsalqgffgvdrsdrdpqharaafsdfsklvrgypnsqyttdatkrlvflkdrlakyeysvaeyytergawvavvnrvegmlrdypdtqatrdalplmenayrqmqmnaqaekvakiiaanssnt]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=bamD+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=bamD]]&nbsp;&nbsp;


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Latest revision as of 21:56, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

bamD

Gene Synonym(s)

ECK2593, b2595, JW2577, ecfD, bamD, yfiO[1][2], yfiO

Product Desc.

YfiO[3]; YfiO-lipoprotein component of outer membrane protein assembly complex[4];

Component of Outer Membrane Protein Assembly Complex[4]

Product Synonyms(s)

predicted lipoprotein[1], B2595[3][1], EcfD[3][1], YfiO[3][1], BamD [2], ecfD, ECK2593, JW2577, yfiO, b2595

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

A consensus has been reached for renaming the genes that encode components of the outer membrane β-barrel assembly machine, (formerly known as the YaeT complex of E. coli or the Omp85 complex of N. meningitidis). The new designation for this multi-component structure is the Bam complex (for beta-barrel assembly machine).

The Bam complex in E. coli consists of BamA (YaeT), BamB (YfgL), BamC (NlpB), BamD (YfiO), and BamE (SmpA). Letters have been assigned on the basis of molecular weight, from highest to lowest [2].

[back to top]




References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=bamD:Quickview&oldid=1398648"