ispF:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
update QV table
touch
 
(7 intermediate revisions by the same user not shown)
Line 23: Line 23:
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  
*  
****************************************************************************************** -->{{Quickview_table_help}}
****************************************************************************************** -->
{| id="R49aeea6ceb464"  class=" tableEdit New_Quickview_Table"   
{|   id="R49aeea6ceb464"  class=" tableEdit New_Quickview_Table"   


|-
|-
!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
||
||
''ispF''  
''ispF''
|-
|-
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
''ECK2741, b2746, JW2716, ygbB''<ref name='LIB:Riley_2006'/>
''ECK2741, b2746, JW2716, ygbB''<ref name='LIB:Riley_2006'/>, ygbB''
|-
|-
!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
Line 45: Line 45:
!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
||
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase<ref name='LIB:Riley_2006'/>, B2746<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgbB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, IspF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase<ref name='LIB:Riley_2006'/>, B2746<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgbB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, IspF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2741, JW2716, ygbB, b2746''
|-
|-
!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
||
||
'''Molecular Function'''
<GO_nr />
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0006744 ubiquinone biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
 
|-
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
Line 70: Line 65:
!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
||
||
[http://ecoliwiki.net/tools/display_dna.php?gene=ispF&loc=MG1655:2869802..2869323,W3110:2870436..2869957,DH10B:2962344..2961865,REL606:2766641..2766162 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2766641&end=2766162&gene=ispF&aa=mrighgfdvhafggegpiiiggvripyekgllahsdgdvalhaltdallgaaalgdigklfpdtdpafkgadsrellreawrriqakgytlgnvdvtiiaqapkmlphipqmrvfiaedlgchmddvnvkattteklgftgrgegiaceavallikatk Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ispF+AND+escherichia+coli Pubmed(ispF)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ispF Textpresso(ispF)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ispF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11816]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001749&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ispF&loc=MG1655%3A2869802..2869323,W3110%3A2870436..2869957,DH10B%3A2962344..2961865,REL606%3A2766641..2766162,BW2952%3A2755135..2755614]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2755135&end=2755614&gene=ispF&aa=mrighgfdvhafggegpiiiggvripyekgllahsdgdvalhaltdallgaaalgdigklfpdtdpafkgadsrellreawrriqakgytlgnvdvtiiaqapkmlphipqmrvfiaedlgchmddvnvkattteklgftgrgegiaceavallikatk]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ispF+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ispF]]&nbsp;&nbsp;


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Latest revision as of 21:55, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ispF

Gene Synonym(s)

ECK2741, b2746, JW2716, ygbB[1], ygbB

Product Desc.

2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase[2][3];

Component of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase[3]

2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECP) synthase; alternative nonmevalonate (DXP) pathway for terpenoid biosynthesis; essential gene; trimeric[4]

Product Synonyms(s)

2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase[1], B2746[2][1], YgbB[2][1], IspF[2][1] , ECK2741, JW2716, ygbB, b2746

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s):

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]





References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ispF:Quickview&oldid=1398566"