rhaR:Quickview: Difference between revisions

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{|   id="L49b0227fe8a18"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[rhaR:Gene|''rhaR]]'' (synonyms: ''ECK3899, b3906, JW3877, rhaC, rhaC1'')<ref name='LIB:Riley_2006'/>
''rhaR''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[rhaR:Gene_Product(s)|RhaR product]]<ref name='LIB:Riley_2006'/>: DNA-binding transcriptional activator, L-rhamnose-binding product, B3906 product, positive regulator for rhaRS operon product
''ECK3899, b3906, JW3877, rhaC, rhaC1''<ref name='LIB:Riley_2006'/>, rhaC1''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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RhaR transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
RhaR transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Transcriptional activator for rhaSR, AraC family<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''DNA-binding transcriptional activator, L-rhamnose-binding<ref name='LIB:Riley_2006'/>, B3906<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RhaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, positive regulator for rhaRS operon<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3899, JW3877, rhaC1, b3906''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rhaSR|rhaSR]]<ref name='LIB:EcoCyc10.6'/>, OP00087, rha  
transcription unit(s): [[:Category:Txn_unit:rhaSR|rhaSR]]<ref name='LIB:EcoCyc10.6'/>, OP00087, rha  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rhaR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10842]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000833&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rhaR&loc=MG1655%3A4096579..4097517,W3110%3A3538125..3537187,REL606%3A4078038..4078976,DH10B%3A4196276..4197214,BW2952%3A3986338..3987186]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3986338&end=3987186&gene=rhaR&aa=mafcnnanllnvfvrhiannqlrslaevatvahqlkllkddffasdqqavavadrypqdvfaehthdfcelvivwrgnglhvlndrpyritrgdlfyihaddkhsyasvndlvlqniiycperlklnldwqgaipgfnasagqphwrlgsmgmaqarqvigqlehessqhvpfanemaellfgqlvmllnrhrytsdslpptssetlldklitrlaaslkspfaldkfcdeascservlrqqfrqqtgmtinqylrqvrvchaqyllqhsrllisdistecgfedsnyfsvvftretgmtpsqwrhlnsqkd]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rhaR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rhaR]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
A GTG start codon 31 codons internal to the previously annotated start codon is predicted based on conservation with Salmonella, eliminating the overlap with rhaS, and having a better RBS (E. Pradel, personal communication, July, 2007).<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:55, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rhaR

Gene Synonym(s)

ECK3899, b3906, JW3877, rhaC, rhaC1[1], rhaC1

Product Desc.

RhaR transcriptional activator[2][3]

Transcriptional activator for rhaSR, AraC family[4]

Product Synonyms(s)

DNA-binding transcriptional activator, L-rhamnose-binding[1], B3906[2][1], RhaR[2][1], positive regulator for rhaRS operon[2][1] , ECK3899, JW3877, rhaC1, b3906

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rhaSR[2], OP00087, rha

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


A GTG start codon 31 codons internal to the previously annotated start codon is predicted based on conservation with Salmonella, eliminating the overlap with rhaS, and having a better RBS (E. Pradel, personal communication, July, 2007).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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