ppdD:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0107, b0108, JW0104''<ref name='LIB:Riley_2006'/>
''ECK0107, b0108, JW0104''<ref name='LIB:Riley_2006'/>, JW0104''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted major pilin subunit<ref name='LIB:Riley_2006'/>, B0108<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PpdD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted major pilin subunit<ref name='LIB:Riley_2006'/>, B0108<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PpdD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0107, JW0104, b0108''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=ppdD&loc=MG1655:117549..117109,W3110:117549..117109,DH10B:91653..91213,REL606:120353..119913 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=120353&end=119913&gene=ppdD&aa=mdkqrgftlielmvvigiiailsaigipayqnylrkaaltdmlqtfvpyrtavelcalehggldtcdggsngipsptttryvsamsvakgvvsltgqeslnglsvvmtpgwdnangvtgwtrncniqsdsalqqacedvfrfddan Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ppdD+AND+escherichia+coli Pubmed(ppdD)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/dev/search?q=ppdD Textpresso(ppdD)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ppdD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12107]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002012&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ppdD&loc=MG1655%3A117549..117109,W3110%3A117549..117109,DH10B%3A91653..91213,REL606%3A120353..119913,BW2952%3A117108..117548]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=117108&end=117548&gene=ppdD&aa=mdkqrgftlielmvvigiiailsaigipayqnylrkaaltdmlqtfvpyrtavelcalehggldtcdggsngipsptttryvsamsvakgvvsltgqeslnglsvvmtpgwdnangvtgwtrncniqsdsalqqacedvfrfddan]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ppdD+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ppdD]]&nbsp;&nbsp;


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Latest revision as of 21:54, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ppdD

Gene Synonym(s)

ECK0107, b0108, JW0104[1], JW0104

Product Desc.

prepilin peptidase dependent protein[2][3]

Type IV pilin; function unknown; first 6 residues may be cleaved by prepilin peptidase to leave an N-terminal methylphenylalanine[4]

Product Synonyms(s)

predicted major pilin subunit[1], B0108[2][1], PpdD[2][1] , ECK0107, JW0104, b0108

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hofC[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


ppdD has been demonstrated to have a CRP-S promoter co-regulated by both Crp and Sxy (Cameron, 2006).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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